| GSAR-package | Gene Set Analysis in R |
| AggrFtest | Aggregated F-Test of Variance Using Fisher's Probability Combining Method |
| findMST2 | Union of the First and Second Minimum Spanning Trees |
| findMST2.PPI | Union of the First and Second Minimum Spanning Trees for PPI Networks |
| GSAR | Gene Set Analysis in R |
| GSNCAtest | Gene Sets Net Correlations Analysis |
| HDP.ranking | High Directed Preorder Ranking of MST |
| KStest | Multivariate Kolmogorov-Smirnov Test of Means |
| MDtest | Multivariate Mean Deviation Test of Means |
| p53DataSet | p53 Dataset of the NCI-60 Cell Lines |
| plotMST2.pathway | Plot MST2 for a pathway in two conditions |
| radial.ranking | Radial Ranking of MST |
| RKStest | Multivariate Radial Kolmogorov-Smirnov Test of Variance |
| RMDtest | Multivariate Radial Mean Deviation Test of Variance |
| TestGeneSets | Test a List of Gene Sets Using a Specific Statistical Method |
| WWtest | Multivariate Generalization of the Wald-Wolfowitz Runs Test |