64b99eff0accf9e398a2d94bd84d1860 *DESCRIPTION
d7b0ffad0aefb826994ba2df7fc2d059 *NAMESPACE
eff80bec23ac99ac2aa076379cb64fcc *NEWS
16f5db3dc6f8b6e372a09ee01f434870 *R/AddValue.R
b9383902bec2bcc4f5cd3ad5ab5be1dc *R/AllClasses.R
76c907d756fd41c990d07ac62d8e4528 *R/AllGenerics.R
d789325d0c3ff9af86358d4ae9129164 *R/ConvVCF2GDS.R
513e0a49ab90da4f41746316a1cf0029 *R/Conversion.R
849d990c53879eee8e880716e9c73823 *R/Internal.R
dbec51c92d985c473968cf9c835a42fe *R/Methods-SeqVarGDSClass.R
3d32a01e61ac23025cbd3a9959096ab2 *R/Methods.R
af2cfeff8a798e7ad72dcfae31403bc6 *R/Summary.R
1979ae7b4bdd9f6df9ed5e7585039c3f *R/UnitList.R
b1f5e7a0bfb22ee3604ef8c5827d494f *R/Utilities.R
b3d922cf0f11eaf22804d39ab31af1af *R/UtilsExport.R
65fa0ab10c9d2506b0c041fe161d8232 *R/UtilsMerge.R
882254103b3d25627d8f814c75f4c9bc *R/asVCF.R
fd8032479dcab894fe7190508fb53c4e *README.md
846acc14c4b38602a80fa851167a1fb7 *build/vignette.rds
692623e629bc74bff8b33ccc8a9d9269 *data/KG_P1_SampData.RData
2af23b289bd04dfde5f7f45ea6725a8e *inst/CITATION
23af59bd6466b22cf9b89612222f3194 *inst/doc/OverviewSlides.Rmd
5cff30033fb8ea58fed065dbd9f98f17 *inst/doc/OverviewSlides.html
85b5693c12d37193deaf84df9c4ce205 *inst/doc/SeqArray.R
f05a124e83c8cc23d11deaf39636b11d *inst/doc/SeqArray.Rmd
6a7adb1d044c4717b6c118bef99accb0 *inst/doc/SeqArray.html
ab86104e059edb0ceea98977aec9994d *inst/doc/SeqArrayTutorial.R
82339caccd3a4074de9c8662834a2c23 *inst/doc/SeqArrayTutorial.Rmd
d72323977598e82ee18868f76106f01e *inst/doc/SeqArrayTutorial.html
f634caf6278b05f6023cc23bcf7d9e1c *inst/extdata/1KG_phase1_release_v3_chr22.gds
2144679bb67fc7d30751e61c1d4cce83 *inst/extdata/CEU_Exon.gds
1dee226aad295e72467948b4ae62caf5 *inst/extdata/CEU_Exon.vcf.gz
39f29f05d541afe27fda50ae5cf082ea *inst/unitTests/data/Valid.RData
95c59c629b661e9f466d43abd8064a7d *inst/unitTests/test_asVCF.R
0d52a8c2cadbc0fc6ee3ccdabfc924ca *inst/unitTests/test_c.R
9e83fa6604e1e2f93b33647b34f2db3a *inst/unitTests/test_cpp.R
c78408dc793068252f08d9a9e979cd8f *inst/unitTests/test_examples.R
85270139310379d3a50c55b814b2dd12 *inst/unitTests/test_func.R
e1ad93ee3ef81e47f524f07bee0fa49f *inst/unitTests/test_utils.R
ce7571728238a97ad521678b69bbf1fd *man/KG_P1_SampData.Rd
9db5c1fe921ee78fad0d6b90dd55549d *man/SeqArray-package.Rd
fdc5366b4fd272eac12d3821f885be58 *man/SeqVarGDSClass-class.Rd
929ab0af85bffc0568f3c6cca61e2c89 *man/seqAddValue.Rd
72d6e647b6fbcbc38abae3e1dd9b795f *man/seqAlleleFreq.Rd
4d740ab280ea784b0430c47fe1da6f49 *man/seqApply.Rd
d6030fc6c195eaaa15d2277f62df6f4d *man/seqAsVCF.Rd
f4e03762478db02de62f9a6507a51599 *man/seqBED2GDS.Rd
c4bbf6124547b98c74b6ea0c8b13cd1b *man/seqBlockApply.Rd
44d8bdf24fded0fba3e91dd867cb9c20 *man/seqCheck.Rd
2f0624d0227715cafa9b973364dc3010 *man/seqClose.Rd
8afd3fd4a44b577b36eb7ad64334560c *man/seqDelete.Rd
d322f0f90f7e78f191c8f4f88fd01347 *man/seqDigest.Rd
6016b444c7490cdd936a0fe48a28ab42 *man/seqEmptyFile.Rd
6e116e358a11f2cd84ffb079c4f8a2c2 *man/seqExampleFileName.Rd
c1e12bad8c153fa62e4fdb408fdf76d1 *man/seqExport.Rd
12ed6d5d6f5ae47482158637c38d2c38 *man/seqGDS2SNP.Rd
2cb25ccd99397cbad400db1b631de467 *man/seqGDS2VCF.Rd
1c2c2c7b277e1bb4747555d45b79a216 *man/seqGet2bGeno.Rd
d406fbc79abb6a4a1b33f1a0e3493cff *man/seqGetData.Rd
bde91b89fc72c266a5eb9df0ecdcb0f7 *man/seqGetFilter.Rd
301938d8b6941fa7c4404b511f202ed1 *man/seqMerge.Rd
fc6f64f0cee63eb2805e02b8b0486432 *man/seqMissing.Rd
016a0a16835369f58a1d7efb472d87d3 *man/seqNewVarData.Rd
86042f3745249146344563e443013ca7 *man/seqNumAllele.Rd
112f0b86954df8a73d7c660521e49232 *man/seqOpen.Rd
c691178131b775afc37ed1e94a492232 *man/seqOptimize.Rd
ee469e6b7e846d57ee6ac0bd59b76aaf *man/seqParallel.Rd
73bbe5b98a572f953d16782c8ac8faed *man/seqParallelSetup.Rd
56c30de401274e9afe54629620eb6cc4 *man/seqRecompress.Rd
94655f0a02eee6a2ad8cc0461be9682c *man/seqResetVariantID.Rd
113001d529d4950097266e8bf1f8cd9d *man/seqSNP2GDS.Rd
ad1c6f820cbe3387ce158138c784ee0a *man/seqSetFilter.Rd
7c17a836baec5729a571e6df8c4011a0 *man/seqSetFilterCond.Rd
c79db406207a9b87609eaaed21865a42 *man/seqStorageOption.Rd
5d0a2ecce6f217092bbd18086d2d2082 *man/seqSummary.Rd
9a1fa43c75a99c3bc469484c75d19028 *man/seqSystem.Rd
c1ec5b62b7d6b3478aabb1f8fc1ca0fd *man/seqTranspose.Rd
bf2073b11106b23220d388b1928e8cea *man/seqUnitApply.Rd
2d2e8ee2f8772c6cd94e29b61c6e3a7e *man/seqUnitFilterCond.Rd
fa63b1da2f6b1e8929917517ebcd5640 *man/seqUnitSlidingWindows.Rd
9fc06f7d2b85a3e698be0a9483706e59 *man/seqUnitSubset.Rd
748dc2a0a84862b653033d62215284e0 *man/seqVCF2GDS.Rd
eeb9db6a3ea8e5c038980e601e7dc198 *man/seqVCF_Header.Rd
21fe99f72dd7b6c4011c216c4f207685 *man/seqVCF_SampID.Rd
48f60af6d2505242c89cf8e83038c187 *src/ConvGDS2VCF.cpp
46a846756aa4dcf195d9eb52a94d44dc *src/ConvToGDS.cpp
f334ae28dc84d8168832bbf27f7ee013 *src/ConvVCF2GDS.cpp
8dec3f8b01e43e86262d1093ab659566 *src/FileMerge.cpp
4b0f433783c9456efe7def27a66c8f0c *src/GetData.cpp
577fcc9cfc862838cc2470480b6f5cf8 *src/Index.cpp
2dcc6cfb1941a99b96eacc7e3b7315be *src/Index.h
ec4b95209b2d7abe10ecfcc875a60f1e *src/LinkSNPRelate.cpp
1ed05138de7c7dfd03c07c8b0a8b731f *src/Makevars
747b99860b612a9853ab11f5e046ddbd *src/Methods.cpp
adbe9e5d90fd0de31201ae50a846aecf *src/R_SeqArray.c
a0445e861388d95b197d4d3ccc5ecb3c *src/ReadBySample.cpp
7f143c2a3ba458c420d3541ad6f232e5 *src/ReadBySample.h
6599c1daf0303419838463a11e0a429f *src/ReadByUnit.cpp
a7f341bfe9a2a6c2eb12cf9e68de1543 *src/ReadByVariant.cpp
a913372970081bdc436a1e491b7d2e28 *src/ReadByVariant.h
f15a95be5541c5efccdee57f32eff3d2 *src/SeqArray.cpp
f3e1a2233389243c874f34bb06f500f9 *src/pkg_test.cpp
b856674d494736713b8fb2d0e69dbd41 *src/samtools_ext.c
ed7df5593f5b18d35e5b811c2280518d *src/vectorization.cpp
226d6f87fd769b42a7764b9f39154abf *src/vectorization.h
ee5a9fdf768ac7861fdf9a9c0e171192 *tests/test.R
23af59bd6466b22cf9b89612222f3194 *vignettes/OverviewSlides.Rmd
f05a124e83c8cc23d11deaf39636b11d *vignettes/SeqArray.Rmd
82339caccd3a4074de9c8662834a2c23 *vignettes/SeqArrayTutorial.Rmd
37a2a7baf8a9c0d56cbcb2358dc15d28 *vignettes/benchmark_rand_samp.svg
1399e727cfe248f7a8f898e42ffe71be *vignettes/seqarray_bib.bib
621d59fe6ecb5f3134fed47477750cc6 *vignettes/seqarray_workflow.svg
