3341fd0dee688e1e80e186ecf958a3ba *DESCRIPTION
d2540b1ec0feff33b65093aac87bf0d7 *NAMESPACE
f2d5520cbcacdb07b74f57dcd4a74a81 *NEWS
a71be190e62b46a6ab89e1415a8267c7 *R/AllGenerics.R
9f5a8b0ec714e000d2926aaa76ddecf7 *R/Gviz-ModifiedSequenceTrack-class.R
75d5421cdc9f677d4ee848ee9dcc73d4 *R/Modifier-Inosine-class.R
1e7a6fe4f21f098003a0727a9618892d *R/Modifier-Inosine-viz.R
7a8f252b27b08e9887be978680b3e69a *R/Modifier-class.R
42ef5e3bfb0ee770b0728683dbf51cd7 *R/Modifier-roc.R
73f72f9af92dbcaf4262232e5fa617eb *R/Modifier-subset.R
2ff00a1628098339dd973cc3319e20e2 *R/Modifier-utils.R
0c9c472a539359acae57bc6a8a246ab0 *R/Modifier-viz.R
fb113b1b2ab8e2d5a65bd0351d1a9bb8 *R/ModifierSet-class.R
33c86f043ff9a05f5a2de3c4bccae409 *R/ModifierSet-comparison.R
a9cc8de8707d37b0bf69f9993f9ca4f9 *R/ModifierSet-viz.R
5c4c57d83589264e1d6f399b203efd05 *R/RNAmodR-external-functions.R
c4986f463b945ad7f4b66a88de67e14b *R/RNAmodR-summary.R
b0ec842f1f747c4826a14a0ea8312b01 *R/RNAmodR.R
da0a2602726ff8c0c173f6c63e3db1ac *R/SequenceData-class.R
93fac6538e49ffc8919e9c15fb9328e8 *R/SequenceData-coverage.R
77e25ed9b10bf580e63e6545c3d196b6 *R/SequenceData-end-pos.R
d7b71aadfb65ba2f600514ab7c3a826b *R/SequenceData-normalized-end-pos.R
118c1647e452a10ea4fd2b632a1f7c70 *R/SequenceData-pileup.R
5c1a1c1d0c7d39e677d6ca3f24c4e493 *R/SequenceData-protected-end-pos.R
456b30bd3a7a3a141a52b9253a5ed16c *R/SequenceData-stats.R
8fd34f397e71a011283f912323e640cd *R/SequenceData-subset.R
c2f07a4dc6fa27f5c15d41079c9597fc *R/SequenceData-viz.R
61cfc491c534a1d37bb4e27d45ade549 *R/SequenceDataFrame-class.R
74e3f3d7b690bf9529e479d44b83704d *R/SequenceDataList-class.R
7d7548d6f24332882d35be152ddeaa7a *R/SequenceDataList-viz.R
f3924ada02d317c058fae61a6f2342cf *R/SequenceDataSet-class.R
5968b38b4d714d31b2212c2968b4e0e4 *R/SequenceDataSet-viz.R
9d054669fa2f4563e9397b4f1a65f402 *R/normalization.R
4dcead4fc07334303011bf5e4cfb2549 *R/settings.R
944bbcd9bedfb0fbe520cefea9cfc0b2 *R/utils-bam.R
216d4373a2c19a913f155a8118c81de4 *R/utils.R
df37e416ad7c0c43d0b67dd06c0ea3dc *README.md
f57ca7965d09e034955b4476a85b1cd3 *build/vignette.rds
b1cecda07b10761c46e4f61c5c2c0411 *data/csd.rda
1599e2e1987b955f3e84c354a0f3f0e0 *data/e3sd.rda
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79c8de4d836eaed6ebc056166902e1c0 *data/esd.rda
d215dadc3996f6cc437f9501ca98612b *data/msi.rda
9c364609e33125ccf5c198e7f7f1b3d5 *data/ne3sd.rda
63470bf852bb5413b83e3e360d68e177 *data/ne5sd.rda
f3e03995e2384dca4693739a0caff237 *data/pesd.rda
c0073572210620bfd39b2f53878a02a7 *data/psd.rda
5d9631a11368b2123889630584db4ef2 *data/sdl.rda
982897491b2fb22d26b6c0ac0a8f6807 *data/sds.rda
f01329a4b2f94390ae7249be7c26bf52 *inst/CITATION
86dc9d95965f3d0f9151bca6619174cc *inst/doc/RNAmodR.R
5b4655ad2527c4b92a92b8ae002a5827 *inst/doc/RNAmodR.Rmd
e0a04b9a86c764980cc8e8c014654a48 *inst/doc/RNAmodR.creation.R
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137584820254ec051518cd074bac75a6 *inst/doc/RNAmodR.creation.html
54c9f515f854e522f438a02c8b485982 *inst/doc/RNAmodR.html
2ed3839f7ca01acd8d59f8aae9041431 *man/CoverageSequenceData-class.Rd
b0ff5e76f549d3198c48bc28446cdb2c *man/EndSequenceData-class.Rd
103cb295263b45e6243a3eeeebf96491 *man/ModInosine-functions.Rd
edcb2f2446286c12e5e72d740296672a *man/ModInosine-internals.Rd
65740d84f7b38d6abcb5a96d91e51a72 *man/ModInosine.Rd
185c1800c4e420ccdefafb708b0fa450 *man/Modifier-class.Rd
a7857a949b67952f284ba813eaee23e1 *man/Modifier-functions.Rd
906a07b400cdb7cec98d50377f8c760b *man/ModifierSet-class.Rd
cc3fb028a935b0c73873afc4f048920c *man/NormEndSequenceData-class.Rd
41cd96c1f662d9622ebda2a3109def3c *man/PileupSequenceData-class.Rd
db95fc2e21d1113e665b83d1da0f5528 *man/ProtectedEndSequenceData-class.Rd
9da98e4ab979cd62c5da85d6b5153da5 *man/RNAmodR-datasets.Rd
ddf2b2857ab94123b93191c71464e476 *man/RNAmodR-development.Rd
48a19c2c1daba159715ad0b35721d46c *man/RNAmodR-internals.Rd
509a6a6c6c14f7e0ebe37a2fcbf7ab58 *man/RNAmodR-package.Rd
d71cc877b45adc673962183764bbf222 *man/RNAmodR.Rd
d6c5d8ed2418259d31a801806bc5c338 *man/SequenceData-class.Rd
d320359da8637eac9cad13d104c606e8 *man/SequenceData-functions.Rd
1ba24135686cd8a076d423b55516f1c2 *man/SequenceDataFrame-class.Rd
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80190cfeccc2647585d3ffc237fa9b00 *man/SequenceDataSet-class.Rd
0064154368a823f58f366b9cba190e68 *man/SequenceModDNAStringSetTrack-class.Rd
bbb63746883a1e420bae12f9bbf15e50 *man/SequenceModRNAStringSetTrack-class.Rd
5f53c0d68e62b3f8e9930cd1fb50da90 *man/aggregate.Rd
9086777d6ebba1abfa8f454210f24923 *man/compareByCoord.Rd
3e97c4fac799da06587f2c45eac2fec5 *man/modify.Rd
9e6d5881888aba2dd2c2ddc14ca51061 *man/plotData.Rd
b7d76bf333bc143204e16c0295db182e *man/plotROC.Rd
edb134001ce8bfbac06be698aa1eeed9 *man/settings.Rd
81df5fea1ac9d76f0e3ffa8d9fbd04da *man/stats.Rd
14ee1951445e39cf05a3fdddc67b705a *man/subsetByCoord.Rd
7e3ece58515499f744fb468b25a6c6db *tests/testthat.R
d873f14819de73e880196a9c07a68bfe *tests/testthat/test-0SequenceData.R
a28861b9d4acd75dd9e85e097d029b68 *tests/testthat/test-0SequenceDataFrame.R
12407f407cd9230d7cceba26ae0a8a24 *tests/testthat/test-0settings.R
5c65b2726c191b20cecca4b6901cef4f *tests/testthat/test-1SequenceDataSet.R
72b55be8099e36c0458e46e01be76f1a *tests/testthat/test-2Modifier.R
6464526eae892d08b61d83291975d74d *tests/testthat/test-3normalization.R
e399bef1eb0893d20876c2b167ba777d *tests/testthat/test-3subset.R
6b5bb1269eaf8764779175c0b908ec79 *tests/testthat/test-3zcomparison.R
45b99d89b3c80ce257c9ecacaccfc2d3 *tests/testthat/test-4roc.R
51adac1822667a2353e3019d08ff3b4b *tests/testthat/test-8visualization.R
1e6d5364a06d437480e9ca50e87acd0b *tests/testthat/test-9show.R
5b4655ad2527c4b92a92b8ae002a5827 *vignettes/RNAmodR.Rmd
9b954a31e831a2e833163ce220199f56 *vignettes/RNAmodR.creation.Rmd
980d1ad20c2a433775371368f7f266ee *vignettes/RNAmodR.png
fd03b0196aee3970a22e994cfca50b3f *vignettes/RNAmodR.svg
9f3f7e8eb7cec7be95cba7f044abe660 *vignettes/references.bib
