4d6c01ff6050828e7da038435fc3ca61 *DESCRIPTION
624a806bc097763cbaa8b26f09fd7d34 *NAMESPACE
455010ba8280fa00d081bcd6a88fe3ea *NEWS
7d434246ce02edf82c39b21abc53ad29 *R/aaGamma.R
04a553e1c8e8b301d4c689ab958ac620 *R/aaGauss.R
402b3e092ad977d79c7e6ef1f84b4ac1 *R/alignsim.R
9757af178014c9171f56c6dfa16fb448 *R/aminoSC-class.R
8436523bab5e3e23e87682f3506b9964 *R/biTree.R
b257f9c873cc1d2325e20d50fbf845d9 *R/codonCoeffs.R
b3956aeafed7e7f13efac3521883cd68 *R/codonFreq.R
d519f54098e7ba8c16e3a1bc9f0556f6 *R/codonvalues-class.R
888de66bd8fba24802d2a1818744f89c *R/discrete-class.R
201d748dd5b46769378d3fbff518693f *R/discreteInput.R
15694553274d5372576844f87dd7f50f *R/dndsCalculator.R
ea49ad380db17b254a0453bb8250e935 *R/fixMatrix.R
70aa551677ed3d19eddedfe5acf0d244 *R/hbInput.R
1a6dd5ffc82d04d9782b2039913fee9d *R/hbParameters-class.R
b21c2d0dea741441d9d59e5555722afb *R/omega-class.R
69d90cd21bee1f9864e956bca7bf6d41 *R/ou-class.R
31325e6be86cffea5b5d2ee213f20d0f *R/ouEvolve.R
c8b8f6c008712c621b1ee5030a7e211c *R/ouInput.R
b1143cc6c188922d9de7eccb2a930e2d *R/scoup-class.R
1ede35b4a4582775621876d60673f54c *R/seqDetails.R
ce0e33a0bb59ff7235fed886aee4fba7 *R/seqParameters-class.R
aefda4db09bf759d31c9e18ccb840ca1 *R/seqWriter.R
5dff26a6a9d1995cf96046dc28b0d692 *R/subsMatrix.R
2a9bee27c3922bed4451d6513a08c898 *R/wInput.R
242be12a0cbc43cb62c31ab6766bf64a *README.md
5119916c292334620df33e1cf62bca01 *build/vignette.rds
c6b90509583e71f4cd9bef1157d3218b *inst/CITATION
914d42e28efeb8b1f1a4844752dd440c *inst/doc/scoup.R
ee532263c3683ae31ad8c5330167e9cb *inst/doc/scoup.Rmd
2067010314b169d3e6ed97de48fbd9df *inst/doc/scoup.html
ab0aacc72cae8b29804cbc799b2e792d *man/aaGamma.Rd
7abe6995836554283542e324cf79b294 *man/aaGauss.Rd
405918f8a85f9e3f52bc1e5f96795deb *man/alignsim.Rd
c191d051724627f4093bc71d0cd4c9a6 *man/aminoSC-class.Rd
5b13dc84c2ec93fae0d68b44ae42557a *man/biTree.Rd
b426a5f02eeba14e68f69b7b15fc86a9 *man/codonCoeffs.Rd
c26805ee79ba393cbd6e71e7b0f75f1d *man/codonFreq.Rd
1e3564c14ffa448cab59de35afc41a93 *man/codonvalues-class.Rd
b3bc8a2f529f2aa4a45d1e7c85d699c0 *man/discrete-class.Rd
d9ed33de2300c456b1289d94d9cc1dfa *man/discreteInput.Rd
bddd3efba19d824678e97608a6f906f1 *man/dndsCalculator.Rd
7ca6d920b52ae4d499e6dd4944fc8ffb *man/fixMatrix.Rd
36595e4d8a5a5a95f662c28633a8c407 *man/hbInput.Rd
e1e11ee4cb9935c88ad7f18a4cadd842 *man/hbParameters-class.Rd
7bad6e61a0667fc77b7c93b1e7ca1c16 *man/omega-class.Rd
252f91f08b45363da6e46cabe8aeaf64 *man/ou-class.Rd
de88b66779247d05ee24c27728e55e87 *man/ouEvolve.Rd
bc2f448bb3a4225db17190eed0e1aef3 *man/ouInput.Rd
9d1d943245e234d5fb4718d62dc7951c *man/scoup-class.Rd
7fb6e0132134fefd4a9afad0909e5214 *man/scoup.Rd
2ce19705a6ae9e43953efbe9126d9a1a *man/seqDetails.Rd
31613f20608093ba1291c8ec522fe405 *man/seqParameters-class.Rd
f193c47477fffe526e3acefc7e5be23a *man/seqWriter.Rd
753eb4d0d6f5596556c1c25acf5f729d *man/subsMatrix.Rd
5fd2922b922ce7330389e0be3b1a4687 *man/wInput.Rd
25a0ec9374e2a18d6d200d2f062d88a2 *tests/branchWise.R
2400447518792bd28b56904ea20810c0 *tests/ouSensitivity.R
2fa66068e173b4a5ef890f34eba10a67 *tests/sensitiveVnVs.R
f1bc2ec4f77b5b97c8d51d93aabd8db0 *tests/siteWise.R
cfa2f685e94f1f3a6efb5ba09ce8f463 *tests/testthat.R
5002c3d0ab769ea2694735fd58eb9de5 *tests/testthat/test-aaGamma.R
077cd73d31945bb758f4683d48d8fa09 *tests/testthat/test-aaGauss.R
969d82bd88d3357abec9d7dc86d70fa6 *tests/testthat/test-alignsim.R
c8c5b3be8d820581a63150adef779543 *tests/testthat/test-biTree.R
bd7dee1b719c9ab62ded62be3dc6ce3a *tests/testthat/test-discreteInput.R
073bfba0727d0f014730c020030e2978 *tests/testthat/test-hbInput.R
a50cb6c73797e3310eab47478b975ae5 *tests/testthat/test-ouInput.R
60ed8ee49e2b12c74d5fb3a9484899b6 *tests/testthat/test-wInput.R
4ac0bee19b2f5db5cb3edbc4791dba20 *vignettes/citation.bib
ee532263c3683ae31ad8c5330167e9cb *vignettes/scoup.Rmd
