Tool for Evaluation of Cell Identity from Transcription Profiles
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Documentation for package ‘CellScore’ version 1.27.0
Help Pages
| BarplotOnOff | Pyramid barplot of on/off scores |
| BoxplotCellScore | Boxplot of the CellScore values across test samples |
| CellScore | CellScore evaluates the identity of cells undergoing cell type transition |
| CellScoreReport | Generate a CellScore report |
| CosineSimScore | Cosine similarity score |
| extractTransitions | Extract scores for given cell transitions |
| heatmapOnOffMarkers | heatmapOnOffMarkers |
| OnOff | On/off score |
| PcaStandards | PCA plot on the most variable portion of the standard expression dataset |
| PlotCosineSimHeatmap | Plot heatmap of the cosine similarity score |
| RugplotCellScore | RugplotCellScore |
| rugplotDonorTargetTest | rugplotDonorTargetTest |
| ScatterplotCellScoreComponents | Scatterplot of the the donor-like and target-like scores |
| scatterplotDonorTargetTest | scatterplotDonorTargetTest |