Model-Based Comparative Analysis of the TCR Repertoire

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Documentation for package ‘powerTCR’ version 1.28.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

clusterPlot	Visualize hierarchical clustering of samples
ddiscgammagpd	The discrete gamma-GPD spliced threshold distribution
fdesponds	Fit the type-I Pareto distribution as according to Desponds et al. (2016)
fdiscgammagpd	Fit the discrete gamma-GPD spliced threshold model
get_bootstraps	Get bootstrapped fits for a list of fitted models
get_distances	Compute matrix of pairwise Jensen-Shannon Distances
get_diversity	Grab important output from a list of fits
get_mle	Grab important output from a list of fits
get_nllh	Grab important output from a list of fits
JS_desponds	Compute the Jensen-Shannon distance between two fitted distributions using the Desponds model
JS_dist	Compute the Jensen-Shannon distance between two model fits
JS_spliced	Compute the Jensen-Shannon distance between two fitted discrete gamma-GPD spliced threshold distributions
parseFile	Load in and parse TCR data files for use by powerTCR
parseFolder	Load in and parse TCR data files for use by powerTCR
pdiscgammagpd	The discrete gamma-GPD spliced threshold distribution
qdiscgammagpd	The discrete gamma-GPD spliced threshold distribution
rdiscgammagpd	The discrete gamma-GPD spliced threshold distribution
repertoires	Two toy examples of sample TCR repertoires.