| bakedpi | Process raw data to compute density estimate. |
| CMSproc-class | A class to hold chromatography-mass spectrometry preprocessing information. |
| CMSraw-class | A class to hold chromatography-mass spectrometry raw data and metadata. |
| cmsRawExample | An example cmsRaw object |
| CMSslice | A class to hold chromatography-mass spectrometry peak bounds and quantifications. |
| CMSslice-class | A class to hold chromatography-mass spectrometry peak bounds and quantifications. |
| colData-method | A class to hold chromatography-mass spectrometry raw data and metadata. |
| densityCutoff | A class to hold chromatography-mass spectrometry peak bounds and quantifications. |
| densityEstimate | A class to hold chromatography-mass spectrometry preprocessing information. |
| densityQuantiles | A class to hold chromatography-mass spectrometry preprocessing information. |
| diffrep | Perform differential analysis. |
| getEICS | Compute extracted ion chromatograms for multiple regions. |
| getTIC | Compute total ion chromatogram (TIC) for a sample. |
| peakBounds | A class to hold chromatography-mass spectrometry peak bounds and quantifications. |
| peakQuants | A class to hold chromatography-mass spectrometry peak bounds and quantifications. |
| plotDensityRegion | Image plot of region of density estimate. |
| readMSdata | Read raw mass spectral data files. |
| show-method | A class to hold chromatography-mass spectrometry preprocessing information. |
| show-method | A class to hold chromatography-mass spectrometry raw data and metadata. |
| show-method | A class to hold chromatography-mass spectrometry peak bounds and quantifications. |
| slicepi | Process raw data to compute density estimate. |