A normalization method for Copy Number Aberration in cancer
samples
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Documentation for package ‘CNAnorm’ version 1.55.0
Help Pages
| addDNACopy | Methods for Function addDNACopy in Package 'CNAnorm' |
| addDNACopy-method | Methods for Function addDNACopy in Package 'CNAnorm' |
| addDNACopy-methods | Methods for Function addDNACopy in Package 'CNAnorm' |
| addSmooth | Methods for Function addSmooth in Package 'CNAnorm' |
| addSmooth-method | Methods for Function addSmooth in Package 'CNAnorm' |
| addSmooth-methods | Methods for Function addSmooth in Package 'CNAnorm' |
| arms | Accessors methods for Function ratio in Package 'CNAnorm' |
| arms-method | Accessors methods for Function ratio in Package 'CNAnorm' |
| arms-methods | Accessors methods for Function ratio in Package 'CNAnorm' |
| chrs | Accessors methods for Function ratio in Package 'CNAnorm' |
| chrs-method | Class "CNAnorm" |
| chrs-methods | Accessors methods for Function ratio in Package 'CNAnorm' |
| chrs<- | Accessors methods for Function ratio in Package 'CNAnorm' |
| chrs<--method | Class "CNAnorm" |
| chrs<--methods | Accessors methods for Function ratio in Package 'CNAnorm' |
| CN | A CNAnorm object with information about most abundant ploidy states, obtained from data LS041. |
| CNAnorm | Class "CNAnorm" |
| CNAnorm-class | Class "CNAnorm" |
| CNAnormWorkflow | Wrapper to '"CNAnorm"' workflow |
| dataFrame2object | Convert a data frame into an object of Class '"CNAnorm"' |
| DerivData-class | Class "DerivData" |
| discreteNorm | Methods for Function addSmooth in Package 'CNAnorm' |
| discreteNorm-method | Methods for Function addSmooth in Package 'CNAnorm' |
| discreteNorm-methods | Methods for Function addSmooth in Package 'CNAnorm' |
| exportTable | Methods for Function exportTable in Package 'CNAnorm' |
| exportTable-method | Methods for Function exportTable in Package 'CNAnorm' |
| exportTable-methods | Methods for Function exportTable in Package 'CNAnorm' |
| gcNorm | Methods for Function gcNorm in Package 'CNAnorm' |
| gcNorm-method | Methods for Function gcNorm in Package 'CNAnorm' |
| gcNorm-methods | Methods for Function gcNorm in Package 'CNAnorm' |
| gPar | An object with the default graphical parameters |
| hg19_hs_ideogr | An object with the ideogram information for homo sapiens - hg19 |
| InData-class | Class "InData" ~~~ |
| length-method | Class "CNAnorm" |
| length-method | Class "DerivData" |
| length-method | Class "InData" ~~~ |
| LS041 | Mapped reads in tumor and matched blood for patient LS041 |
| Params-class | Class "Params" |
| peakPloidy | Methods for Function peakPloidy in Package 'CNAnorm' |
| peakPloidy-method | Methods for Function peakPloidy in Package 'CNAnorm' |
| peakPloidy-methods | Methods for Function peakPloidy in Package 'CNAnorm' |
| plotGenome | Methods for Function plotGenome in Package 'CNAnorm' |
| plotGenome-method | Methods for Function plotGenome in Package 'CNAnorm' |
| plotGenome-methods | Methods for Function plotGenome in Package 'CNAnorm' |
| plotPeaks | Methods for Function plotPeaks in Package 'CNAnorm' |
| plotPeaks-method | Methods for Function plotPeaks in Package 'CNAnorm' |
| plotPeaks-methods | Methods for Function plotPeaks in Package 'CNAnorm' |
| pos | Accessors methods for Function ratio in Package 'CNAnorm' |
| pos-method | Accessors methods for Function ratio in Package 'CNAnorm' |
| pos-methods | Accessors methods for Function ratio in Package 'CNAnorm' |
| pos<- | Accessors methods for Function ratio in Package 'CNAnorm' |
| pos<--method | Class "CNAnorm" |
| pos<--methods | Accessors methods for Function ratio in Package 'CNAnorm' |
| ratio | Methods for Function ratio in Package 'CNAnorm' |
| ratio-method | Class "CNAnorm" |
| ratio-methods | Methods for Function ratio in Package 'CNAnorm' |
| ratio.n | Methods for Function ratio in Package 'CNAnorm' |
| ratio.n-method | Class "CNAnorm" |
| ratio.n-methods | Methods for Function ratio in Package 'CNAnorm' |
| ratio.s | Methods for Function ratio in Package 'CNAnorm' |
| ratio.s-method | Class "CNAnorm" |
| ratio.s-methods | Methods for Function ratio in Package 'CNAnorm' |
| ratio.s.n | Methods for Function ratio in Package 'CNAnorm' |
| ratio.s.n-method | Class "CNAnorm" |
| ratio.s.n-methods | Methods for Function ratio in Package 'CNAnorm' |
| segMean | Methods for Function ratio in Package 'CNAnorm' |
| segMean-method | Class "CNAnorm" |
| segMean-methods | Methods for Function ratio in Package 'CNAnorm' |
| segMean.n | Methods for Function ratio in Package 'CNAnorm' |
| segMean.n-method | Class "CNAnorm" |
| segMean.n-methods | Methods for Function ratio in Package 'CNAnorm' |
| sugg.peaks | Methods for Function to retrieve suggested/validated ploidy and peaks in Package 'CNAnorm' |
| sugg.peaks-method | Class "CNAnorm" |
| sugg.peaks-methods | Methods for Function to retrieve suggested/validated ploidy and peaks in Package 'CNAnorm' |
| sugg.ploidy | Methods for Function to retrieve suggested/validated ploidy and peaks in Package 'CNAnorm' |
| sugg.ploidy-method | Class "CNAnorm" |
| sugg.ploidy-methods | Methods for Function to retrieve suggested/validated ploidy and peaks in Package 'CNAnorm' |
| valid.peaks | Methods for Function to retrieve suggested/validated ploidy and peaks in Package 'CNAnorm' |
| valid.peaks-method | Class "CNAnorm" |
| valid.peaks-methods | Methods for Function to retrieve suggested/validated ploidy and peaks in Package 'CNAnorm' |
| valid.ploidy | Methods for Function to retrieve suggested/validated ploidy and peaks in Package 'CNAnorm' |
| valid.ploidy-method | Class "CNAnorm" |
| valid.ploidy-methods | Methods for Function to retrieve suggested/validated ploidy and peaks in Package 'CNAnorm' |
| validation | Methods for Function addSmooth in Package 'CNAnorm' |
| validation-method | Methods for Function addSmooth in Package 'CNAnorm' |
| validation-methods | Methods for Function addSmooth in Package 'CNAnorm' |
| [-method | Class "CNAnorm" |