Integration of CellNOptR to add missing links

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Documentation for package ‘CNORfeeder’ version 1.49.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

CNORfeeder-package	R package to integrate literature-constrained and data-driven methods to infer signalling networks from perturbation experiments
Binference	Bayesian network inference
buildFeederObjectDynamic	Building Feeder-Object for the integration to the PKN
cnolist	CNOlist
CNORfeeder	R package to integrate literature-constrained and data-driven methods to infer signalling networks from perturbation experiments
database	OmniPath PPI
feederObject	Feeder Object
gaBinaryT1W	Genetic algorithm used to optimise a model differently weighting links
identifyMisfitIndices	Identifying indices of poorly fitted measurements
indices	Mis-fit indices
integratedModel	Integrated Model
integrateLinks	Integrating the new links to the PKN
linksRanking	Ranking of links inferred from data
makeBTables	Make Boolean tables
mapBTables2model	Integrate Boolean tables with the model
mapDDN2model	Integrate data-drive network with the model
MIinference	Mutual information based network inference
model	Prior Knowledge Network
PPINigraph	Protein-protein interaction netwrok
runDynamicFeeder	Modelling the integrated PKN with CNORode
simData	CNORode simuation data
UniprotIDdream	Uniprot identifiers for proteins in DreamModel
weighting	Weight integrated links.