Differential Expressed Windows Based on Negative Binomial
Distribution
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Documentation for package ‘DEWSeq’ version 1.23.0
Help Pages
| DESeqDataSetFromSlidingWindows | create DESeq data object |
| extractRegions | extract significant regions |
| filterCounts | filter count data |
| resultsDEWSeq | extract DEWseq results |
| slbpDds | ENCODE eCLIP data SLBP in K562 |
| slbpRegions | ENCODE eCLIP data SLBP in K562 |
| slbpVst | ENCODE eCLIP data SLBP in K562 |
| slbpWindows | ENCODE eCLIP data SLBP in K562 |
| SLBP_K562_w50s20 | ENCODE eCLIP data for SLBP in K562, low count filtered |
| toBED | windows/regions to BED |
| topWindowStats | stats for the top windows in each region |