A Tool for Optimizing Combinations of DNA Barcodes Used in Multiplexed Experiments on Next Generation Sequencing Platforms

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Documentation for package ‘DNABarcodeCompatibility’ version 1.25.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

DNABarcodeCompatibility-package	DNABarcodeCompatibility: to find optimised sets of compatible barcodes with least heterogeneity in barcode usage for multiplex experiments performed on next generation sequencing platforms.
distance	Calculate distance between two barcodes.
distance_filter	Select barcode combinations with error correction properties
experiment_design	Find a set of barcode combinations with least heterogeneity in barcode usage for single and dual indexing
file_loading_and_checking	Loading and checking DNA barcodes.
get_all_combinations	Get all compatible combinations.
get_random_combinations	Get a large set of compatible combinations.
IlluminaIndexes	Barcode dataset from Illumina with features.
IlluminaIndexesRaw	Barcode dataset from Illumina.
optimize_combinations	Find a set of barcode combinations with least heterogeneity in barcode usage