Helper Functions for LIBD Deconvolution
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Documentation for package ‘DeconvoBuddies’ version 1.1.0
Help Pages
| create_cell_colors | Create a cell color palette for plots |
| est_prop | Test Estimated Cell Type Proportions |
| fetch_deconvo_data | Download Human DLPFC Deconvolution Data |
| findMarkers_1vAll | Calculate 1 vs. All standard fold change for each gene x cell type, wrapper function for 'scran::findMarkers()'. |
| get_mean_ratio | Get Mean Ratio for Each Gene x Cell Type |
| make_test_sce | Simulate a SingleCellExperiment for testing. |
| marker_stats_1vAll | 1vAll Marker Statistics example data |
| marker_test | Markers stats from sce_DLPFC_example |
| plot_composition_bar | Create barplot of average cell type composition |
| plot_gene_express | Plot the gene expression of a list of genes in a SCE object |
| plot_marker_express | Plot gene expression violin plots for top marker genes for one cell type |
| plot_marker_express_ALL | Plot the top marker genes for ALL cell types |
| plot_marker_express_List | Plot a nested list of genes as a multi-page pdf |
| RNAScope_prop | Cell Type Proportions estimated from RNAScope |
| rse_bulk_test | Test bulk rse dataset |
| sce_ab | Toy SCE object for testing |