Provides structure and functions for the analysis of OTU data
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Documentation for package ‘OTUbase’ version 1.59.0
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| OTUbase-package | The OTUbase package: A tool for organizing and manipulating Operational Taxonomic Unit data |
| abundance | abundance |
| abundance-method | abundance |
| aData | assignmentData |
| aData-method | assignmentData |
| aData<- | assignmentData |
| aData<--method | assignmentData |
| assignmentData | assignmentData |
| assignmentData-method | assignmentData |
| assignmentData<- | assignmentData |
| assignmentData<--method | assignmentData |
| assignmentLabels | assignmentData |
| assignmentLabels-method | assignmentData |
| assignmentLabels<- | assignmentData |
| assignmentLabels<--method | assignmentData |
| assignmentNames | assignmentData |
| assignmentNames-method | assignmentData |
| clusterSamples | clusterSamples |
| clusterSamples-generic | clusterSamples |
| clusterSamples-method | clusterSamples |
| getOTUs | Other functions |
| getSamples | Other functions |
| notus | Other Generics |
| notus-method | Other Generics |
| nsamples | Other Generics |
| nsamples-method | Other Generics |
| OTUbase | The OTUbase package: A tool for organizing and manipulating Operational Taxonomic Unit data |
| otuID | Accessor functions for OTUset and TAXset objects |
| otuID-method | Accessor functions for OTUset and TAXset objects |
| otuseqplot | Other functions |
| OTUset | "OTUset" class for OTU data |
| OTUsetB | "OTUset" class for OTU data |
| OTUsetB-class | "OTUset" class for OTU data |
| OTUsetF | "OTUset" class for OTU data |
| OTUsetF-class | "OTUset" class for OTU data |
| OTUsetQ | "OTUset" class for OTU data |
| OTUsetQ-class | "OTUset" class for OTU data |
| otusize | Other functions |
| otuspersample | Other functions |
| o_diversity | Other functions |
| o_estimateR | Other functions |
| readOTUset | readOTUset |
| readTAXset | readTAXset |
| rseqplot | Other functions |
| sampleData | sampleData |
| sampleData-method | sampleData |
| sampleData<- | sampleData |
| sampleData<--method | sampleData |
| sampleID | Accessor functions for OTUset and TAXset objects |
| sampleID-method | Accessor functions for OTUset and TAXset objects |
| sampleLabels | sampleData |
| sampleLabels-method | sampleData |
| sampleLabels<- | sampleData |
| sampleLabels<--method | sampleData |
| sData | sampleData |
| sData-method | sampleData |
| sData<- | sampleData |
| sData<--method | sampleData |
| seqnames | Other Generics |
| seqnames-method | Other Generics |
| seqspersample | Other functions |
| sharedotus | Other functions |
| subOTUset | subOTUset |
| subTAXset | subTAXset |
| tax | Accessor functions for OTUset and TAXset objects |
| tax-method | Accessor functions for OTUset and TAXset objects |
| tax<- | Accessor functions for OTUset and TAXset objects |
| tax<--method | Accessor functions for OTUset and TAXset objects |
| TAXset | "TAXset" class for TAX data |
| TAXsetB | "TAXset" class for TAX data |
| TAXsetB-class | "TAXset" class for TAX data |
| TAXsetF | "TAXset" class for TAX data |
| TAXsetF-class | "TAXset" class for TAX data |
| TAXsetQ | "TAXset" class for TAX data |
| TAXsetQ-class | "TAXset" class for TAX data |