Normalization of single cell RNA-seq data
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Documentation for package ‘SCnorm’ version 1.31.1
Help Pages
| correctWithin | correctWithin |
| evaluateK | Evaluate normalization using K slope groups |
| ExampleSimSCData | Example datasets for SCnorm |
| generateEvalPlot | Internal plotting function. |
| getCounts | getCounts |
| getDens | getDens |
| getSlopes | Estimate gene specific count-depth relationships |
| GetTD | Fit group regression for specific quantile and degree |
| normWrapper | Iteratively fit group regression and evaluate to choose optimal K |
| plotCountDepth | Evaluate the count-depth relationship before (or after) normalizing the data. |
| plotWithinFactor | Evaluate gene-specific factors in the the data. |
| quickReg | quickReg |
| redoBox | redoBox |
| results | results |
| scaleNormMultCont | Scale multiple conditions |
| SCnorm | SCnorm |
| SCnormFit | Fit group quantile regression for K groups |
| splitGroups | splitGroups |