Transcription Factors Association Rules Miner

Documentation for package ‘TFARM’ version 1.31.0

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DELTA	Contains the delta variations of support, confidence and lift.
distribViz	Boxplots visualization of the Importance Index distribution of a set of transcription factors.
heatI	Generates an heatmap visualization of the mean Importance Index of pairs of transcription factors.
IComp	Computes the Importance Index of a transcription factor in a set of association rules.
IMP	Contains the mean Importance Index of each co-regulator.
imp_FOSL2	Contains the set of Importance Indexes of FOSL2 in a given set of rules.
IMP_Z	Contains the Importance Index associated with each co-regulator which is present in at least one association rule.
IPCA	Principal Components Analysis for distributions of variations of support and confidence obtained removing a transcription factor from a set of rules.
items	Extracts items in the left-hand-side of an association rule.
itemset	Builds the itemset in the left-hand-side of an association rule.
I_c_2	Contains the mean Importance Index of pairs of transcription factors which are present in at least one association rule.
MCF7_chr1	Contains genomic regions in the first chromosome of the MCF-7 human breast adenocarcinoma cell line at the ranges side, and the presence indexes of transcription factors in such regions at the metadata side.
presAbs	Splits a set of transcription factors in 'present' or 'absent' transcription factors in a set of rules.
p_TFs	Contains co-regulators found in at least one association rule.
rulesGen	Exctracts relevant association rules.
rulesTF	Extracts a subset of rules that contain a certain transcription factor (or a combination of transcription factors) in their left-hand-side.
rulesTF0	Substitutes the presence of a transcription factor (or a combination of transcription factors) in the left-hand-side of a set of rules, with its absence.
r_FOSL2	Represents an example of rulesTF output, i.e. the subset of rules whose left-hand-sides contain FOSL2, and the correspondent quality measures.
r_noFOSL2	Represents an example of rulesTF0 output, where the presence of FOSL2 was replaced with its absence.
r_TEAD4	Contains the association rules for the prediction of the presence of the transcription factor TEAD4 in the considered genomic regions, i.e., with TEAD4 in the right-hand-side of the association rules.
search_rule	Finds an association rule in a dataset.
TF_Imp	Contains the candidate co-regulators and the number of rules associated with them.