Single-Cell Trajectory Analysis Utilities

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Documentation for package ‘TrajectoryUtils’ version 1.17.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

$-method	The PseudotimeOrdering class
$<--method	The PseudotimeOrdering class
averagePseudotime	Compute the average pseudotime
cellData	The PseudotimeOrdering class
cellData<-	The PseudotimeOrdering class
cellData<--method	The PseudotimeOrdering class
cellnames	The PseudotimeOrdering class
cellnames<-	The PseudotimeOrdering class
cellnames<--method	The PseudotimeOrdering class
createClusterMST	Minimum spanning trees on cluster centroids
createClusterMST-method	Minimum spanning trees on cluster centroids
defineMSTPaths	Define paths through the MST
guessMSTRoots	Guess the roots of a MST
ncells	The PseudotimeOrdering class
npaths	The PseudotimeOrdering class
pathData	The PseudotimeOrdering class
pathData<-	The PseudotimeOrdering class
pathData<--method	The PseudotimeOrdering class
pathnames	The PseudotimeOrdering class
pathnames<-	The PseudotimeOrdering class
pathnames<--method	The PseudotimeOrdering class
pathStat	The PseudotimeOrdering class
pathStat<-	The PseudotimeOrdering class
pathStat<--method	The PseudotimeOrdering class
pathStatNames	The PseudotimeOrdering class
pathStatNames<-	The PseudotimeOrdering class
pathStatNames<--method	The PseudotimeOrdering class
pathStats	The PseudotimeOrdering class
pathStats<-	The PseudotimeOrdering class
pathStats<--method	The PseudotimeOrdering class
PseudotimeOrdering	The PseudotimeOrdering class
PseudotimeOrdering-class	The PseudotimeOrdering class
rowmean	Compute column means based on a grouping variable
rowmedian	Compute column means based on a grouping variable
show-method	The PseudotimeOrdering class
splitByBranches	Split a graph into branch-free paths