GUI for limma Package with Affymetrix Microarrays
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Documentation for package ‘affylmGUI’ version 1.83.0
Help Pages
A C D E F G H I L N O P Q R S T U V
| affylmGUI-package | The affylmGUI Package: Graphical User Interface for limma analysis of Affymetrix microarrays |
-- A --
| AboutaffylmGUI | Internal Functions |
| affyHelp | Internal Functions |
| affylmGUI | Graphical User Interface for the limma microarray package |
| affylmGUIhelp | Internal Functions |
| affyPlotMA | Internal Functions |
| affyPlotMAcontrast | Internal Functions |
-- C --
| ChooseCDF | Internal Functions |
| ChooseContrastParameterization | Internal Functions |
| chooseDir | Internal Functions |
| ChooseEbayesStatistic | Internal Functions |
| ComputeContrasts | Internal Functions |
| ComputeLinearModelFit | Internal Functions |
| CopyGraph | Internal Functions |
-- D --
| DeleteContrastParameterization | Internal Functions |
| DensityPlot | Internal Functions |
| DensityPlotAll | Internal Functions |
-- E --
| evalRcode | Internal Functions |
| ExportHTMLreport | Internal Functions |
| ExportNormalizedExpressionValues | Internal Functions |
| ExportTopTable | Internal Functions |
-- F --
| fixSeps | Internal Functions |
-- G --
| generalPlotFunction | Internal Functions |
| GetComponentsToExportInHTMLreport | Internal Functions |
| GetContrast | Internal Functions |
| GetContrastNamesForHeatDiagram | Internal Functions |
| GetContrastParameterizationName | Internal Functions |
| GetContrasts | Internal Functions |
| GetDEcutoff | Internal Functions |
| GetGeneLabelsOptions | Internal Functions |
| GetJpegOrPngParams | Internal Functions |
| GetJpegOrPngX11Params | Internal Functions |
| GetlimmaDataSetName | Internal Functions |
| GetLogPLMDataChoice | Internal Functions |
| GetMultipleContrasts | Internal Functions |
| GetNormalizationMethod | Internal Functions |
| getPackageVersion | Internal Functions |
| GetParameterizationName | Internal Functions |
| GetPlotLabels | Internal Functions |
| GetPlotSize | Internal Functions |
| GetPlotTitle | Internal Functions |
| GetPValueCutoff | Internal Functions |
| GetResidualTypeChoice | Internal Functions |
| GetRNATypesFrom.ContrastsFromDropDowns.String | Internal Functions |
| GetSetNames | Internal Functions |
| GetSlideNum | Internal Functions |
| GetSlideNums | Internal Functions |
| GetWhichProbes | Internal Functions |
| GetWtAreaParams | Internal Functions |
| GetWtFlagParams | Internal Functions |
-- H --
| HeatDiagramDialog | Internal Functions |
| HeatDiagramPlot | Internal Functions |
| HTMLplotUsingFunction | Internal Functions |
-- I --
| ImageArrayPlot | Internal Functions |
| ImageQualityResidualPlot | Internal Functions |
| ImageQualityWeightPlot | Internal Functions |
| initGlobals | Internal Functions |
| IntensityHistogram | Internal Functions |
| IntensityHistogramAll | Internal Functions |
| internal | Internal Functions |
-- L --
| limmaHelp | Internal Functions |
| LogOddsPlot | Internal Functions |
-- N --
| NewLimmaFile | Internal Functions |
| NormalizedIntensityBoxPlot | Internal Functions |
| NormalizeNow | Internal Functions |
| nstrstr | Internal Functions |
| NUSEPlotAll | Internal Functions |
-- O --
| onDestroy | Internal Functions |
| onExit | Internal Functions |
| OpenALimmaFile | Internal Functions |
| OpenCDFandTargetsfiles | Internal Functions |
| OpenCDFFile | Internal Functions |
| OpenLimmaFile | Internal Functions |
| OpenTargetsFile | Internal Functions |
-- P --
| PlotOptions | Internal Functions |
-- Q --
| QQTplot | Internal Functions |
-- R --
| RawIntensityBoxPlot | Internal Functions |
| Require | Internal Functions |
| Resize | Internal Functions |
| RLEPlotAll | Internal Functions |
| RNADegradationPlotAll | Internal Functions |
-- S --
| SaveAsLimmaFile | Internal Functions |
| SaveGraphAsJpeg | Internal Functions |
| SaveGraphAsPDF | Internal Functions |
| SaveGraphAsPNG | Internal Functions |
| SaveGraphAsPostscript | Internal Functions |
| SaveLimmaFile | Internal Functions |
| SetupPlotKeyBindings | Internal Functions |
| SetupPlotMenus | Internal Functions |
| SetWD | Internal Functions |
| showChangeLog | Internal Functions |
| showCitations | Internal Functions |
| showTopTable | Internal Functions |
| SimplifyContrastsExpression | Internal Functions |
| strstr | Internal Functions |
-- T --
| tclArrayVar | Internal Functions |
| TclRequire | Internal Functions |
| Try | Internal Functions |
| TryReadImgProcFile | Internal Functions |
-- U --
| UpDownOrBoth | Internal Functions |
-- V --
| vennDiagramaffylmGUI | Internal Functions |
| VennDiagramPlot | Internal Functions |
| ViewContrastsMatrixAsPairs | Internal Functions |
| ViewContrastsMatrixInTable | Internal Functions |
| ViewExistingContrastParameterization | Internal Functions |
| ViewRNATargets | Internal Functions |