Differential cell-type-specific allelic imbalance
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Documentation for package ‘airpart’ version 1.17.0
Help Pages
| allelicRatio | Fit beta-binomial across cell types |
| cellQC | Quality control on cells |
| consensusPart | Consensus Partitions |
| estDisp | Estimate overdispersion parameter of a beta-binomial |
| extractResult | Extract results from an airpart analysis |
| featureQC | Quality control on features |
| fusedLasso | Generalized fused lasso to partition cell types by allelic imbalance |
| geneCluster | Gene clustering based on allelic ratio matrix with pseudo-count |
| makeForest | Plot allelic ratio result as forest |
| makeHeatmap | Plot allelic ratio as heatmap |
| makeOffByOneAdjMat | Generating adjancy matrix for neighboring cell states. |
| makeSimulatedData | Make simulated data for airpart |
| makeStep | Plot group partition and posterior allelic ratio estimates by step |
| makeViolin | Posterior mean allelic ratio estimates in violin plots |
| preprocess | Preprocess the SingleCellExperiment |
| summaryAllelicRatio | Allelic ratio summary |
| wilcoxExt | Extension on Pairwise Mann Whitney Wilcoxon Test for partitioning |