Analyze Barcode Data from Clonal Tracking Experiments
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Documentation for package ‘barbieQ’ version 1.1.2
Help Pages
| clusterCorrelatingBarcodes | Cluster correlated Barcodes based on pairwise correlation |
| createBarbieQ | Extract Barcode count data and build into a 'barbieQ' object for subsequent analysis |
| monkeyHSPC | Monkey HSPC Cell Barcoding Data |
| plotBarcodeHeatmap | Plot Barcode CPM (or occurrence) across samples in a Heatmap |
| plotBarcodeMA | Plot Barcodes catogorized by significant change using a dot plot |
| plotBarcodePairCorrelation | Plot Barcode pairwise correlation |
| plotBarcodePareto | Plot contributions of Barcodes split by _top_ v.s. _bottom_ in a circular bar plot. |
| plotBarcodeProportion | Plot Barcode contributions as mean Barcode proportion across samples |
| plotBarcodePValue | Plot Barcodes categorized by significant change using a dot plot |
| plotBarcodeSankey | Plot total contributions of Barcodes grouped by _top_ vs. _bottom_ in a stacked bar plot. |
| plotSamplePairCorrelation | Plot sample pairwise correlation in a Heatmap |
| plotSignifBarcodeHeatmap | Plot Barcodes categorized by significant change using a Heatmap |
| plotSignifBarcodeProportion | Plot Barcode contributions as mean Barcode proportion across samples |
| tagTopBarcodes | Tag each Barcode as being part of the major contributors or not |
| testBarcodeSignif | Test significant change in Barcode proportion or occurrence between sample groups |