Visualization Techniques for Clonal Evolution

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Documentation for package ‘clevRvis’ version 1.9.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

clevRvis	Visualization Techniques for Clonal Evolution
clevRvisShiny	A user interface to perform all analyses with clevRvis.
clevRvis_package	Visualization Techniques for Clonal Evolution
cloneFamily	Class seaObject
cloneFamily-method	Class seaObject
cloneFamily<-	Class seaObject
cloneFamily<--method	Class seaObject
cloneLabels	Class seaObject
cloneLabels-method	Class seaObject
cloneLabels<-	Class seaObject
cloneLabels<--method	Class seaObject
col	Class seaObject
col-method	Class seaObject
col<-	Class seaObject
col<--method	Class seaObject
combinedPlot	Generate a combined basic graph and detailed visualization of clonal evolution
createSeaObject	Create a seaObject
defaultLabels	Class seaObject
defaultLabels-method	Class seaObject
defaultLabels<-	Class seaObject
defaultLabels<--method	Class seaObject
dolphinPlot	Generate a detailed visualization of clonal evolution
exploreTrees	Explore alternative trees
extSharkPlot	Generate an extended graph visualization of clonal evolution
fracTable	Class seaObject
fracTable-method	Class seaObject
fracTable<-	Class seaObject
fracTable<--method	Class seaObject
nestLevels	Class seaObject
nestLevels-method	Class seaObject
nestLevels<-	Class seaObject
nestLevels<--method	Class seaObject
originTimepoint	Class seaObject
originTimepoint-method	Class seaObject
originTimepoint<-	Class seaObject
originTimepoint<--method	Class seaObject
parents	Class seaObject
parents-method	Class seaObject
parents<-	Class seaObject
parents<--method	Class seaObject
plaicePlot	Generate an allele-aware visualization of clonal evolution
seaObject-class	Class seaObject
sharkPlot	Generate a basic graph visualization of clonal evolution
show	Class seaObject
show-method	Class seaObject
timepoints	Class seaObject
timepoints-method	Class seaObject
timepoints<-	Class seaObject
timepoints<--method	Class seaObject
xpos	Class seaObject
xpos-method	Class seaObject
xpos<-	Class seaObject
xpos<--method	Class seaObject
ybtm	Class seaObject
ybtm-method	Class seaObject
ybtm<-	Class seaObject
ybtm<--method	Class seaObject
ytop	Class seaObject
ytop-method	Class seaObject
ytop<-	Class seaObject
ytop<--method	Class seaObject