Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing

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Documentation for package ‘dmrseq’ version 1.29.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

annot.chr21	annot.chr21: Annotation information for chromosome 21, hg38 genome
BS.chr21	BS.chr21: Whole-genome bisulfite sequencing for chromosome 21 from Lister et al.
dmrPlotAnnotations	Add annotations to DMR plots
dmrs.ex	dmrs.ex: Example results of DMRs
dmrseq	Main function for detecting and evaluating significance of DMRs.
getAnnot	Retrieve annotation information
meanDiff	Function to compute raw mean methylation differences
plotDMRs	Plot Differentially Methylated Regions
plotEmpiricalDistribution	Plot the empirical distribution of the methylation beta vals or coverage
simDMRs	Simulate Differentially Methylated Regions