GEMINI: Variational inference approach to infer genetic
interactions from pairwise CRISPR screens
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Documentation for package ‘gemini’ version 1.23.0
Help Pages
| %<>% | Compound pipe |
| %>% | Pipe |
| .median_normalize | Median normalization |
| counts | Big Papi counts matrix |
| gemini_boxplot | gemini_boxplot |
| gemini_calculate_lfc | Calculate log-fold change |
| gemini_create_input | gemini_create_input |
| gemini_inference | gemini_inference |
| gemini_initialize | gemini_initialize |
| gemini_parallelization | Parallelization in GEMINI |
| gemini_plot_mae | MAE plot |
| gemini_prepare_input | Prepare input before Model creation |
| gemini_score | Scoring Combination Effect |
| guide.annotation | Big Papi guide annotations |
| initialize_s | initialize_s |
| initialize_tau | initialize_tau |
| initialize_x | intialize_x |
| initialize_y | initialize_y |
| Input | Input object from Big Papi |
| Model | Model object from Big Papi |
| sample.replicate.annotation | Big Papi sample and replicate annotations |
| Sgene2Pguides_hash | Gene hashing |
| Sguide2Pguides_hash | Guide hashing |
| update_mae | update_mae |
| update_s_pb | update_s |
| update_tau_pb | update_tau_pb |
| update_x_pb | update_x_p |
| update_y_pb | update_y_pb |