Application of gene classifiers

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Documentation for package ‘geneClassifiers’ version 1.33.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bracket-method	Extract
ClassifierParameters	An S4 class to store classifier parameters.
ClassifierResults	An S4 class to store classifier results.
dim-method	Dimensions of an Object
exampleMAS5	Example MAS5.0 ExpressionSet
FixedExpressionData	An S4 class to store classifier parameters.
getBatchCorrection	Obtain the batch correction status for a classifier result.
getBatchCorrection-method	Obtain the batch correction status for a classifier result.
getCitations	Obtain citations to the classifier
getCitations-method	Obtain citations to the classifier
getClassifications	Obtain classifier classifications.
getClassifications-method	Obtain classifier classifications.
getClassifier	Obtain a classifier definition.
getClassifier-method	Obtain a classifier definition.
getDecisionBoundaries	Obtain the decision boundaries defined for the classifier.
getDecisionBoundaries-method	Obtain the decision boundaries defined for the classifier.
getDescription	Obtain classifiers' description.
getDescription-method	Obtain classifiers' description.
getEventChain	Obtain classifiers' event chain.
getEventChain-method	Obtain classifiers' event chain.
getIntercept	Obtain classifiers' intercept.
getIntercept-method	Obtain classifiers' intercept.
getMeans	Obtain classifiers' reference means.
getMeans-method	Obtain classifiers' reference means.
getName	Obtain object names.
getName-method	Obtain object names.
getNormalizationMethod	Obtain normalization method
getNormalizationMethod-method	Obtain normalization method
getNormalizationMethods	Obtain normalization method
getProbeNames	Obtain probe-set names.
getProbeNames-method	Obtain probe-set names.
getScores	Obtain classifier score.
getScores-method	Obtain classifier score.
getSds	Obtain classifiers' reference standard deviations.
getSds-method	Obtain classifiers' reference standard deviations.
getTargetValue	Obtain the targetValue
getTargetValue-method	Obtain the targetValue
getTrainingData	Obtain classifier training data.
getTrainingData-method	Obtain classifier training data.
getWeightingType	Obtain the weighting type used to obtain a classifier result.
getWeightingType-method	Obtain the weighting type used to obtain a classifier result.
getWeightingTypes	Obtain the weighting type used to obtain a classifier result.
getWeights	Obtain classifier weights.
getWeights-method	Obtain classifier weights.
runClassifier	Perform classification.
runClassifier-method	Perform classification.
setNormalizationMethod	Prepare data.
showClassifierList	Show classifier names and descriptions.
[-method	Extract
[[-method	Extract