megadepth: BigWig and BAM related utilities
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Documentation for package ‘megadepth’ version 1.19.0
Help Pages
| bam_to_bigwig | Convert a BAM file to a BigWig |
| bam_to_junctions | Extract junctions from a BAM file |
| get_coverage | Compute coverage summarizations across a set of regions |
| install_megadepth | Install Megadepth |
| megadepth_cmd | Run Megadepth commands |
| megadepth_shell | Run Megadepth commands |
| process_junction_table | Process junctions into a STAR compatible format |
| read_coverage | Read a coverage TSV file created by Megadepth |
| read_coverage_table | Read a coverage TSV file created by Megadepth |
| read_junction_table | Read a junction TSV file created by Megadepth as a table |