Microbiota STability ASsessment via Iterative cluStering

---

Documentation for package ‘microSTASIS’ version 1.9.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

clr	Detected ASV from multiple individuals at four different sampling times.
iterativeClustering	Stability of individuals after iteratively performing Hartigan-Wong k-means clustering.
iterativeClusteringCV	Cross validation of the iterative Hartigan-Wong k-means clustering.
mSerrorCV	Compute the mean absolute error (MAE) in percentage after 'iterativeClusteringCV()'.
mSinternalPairedTimes	Internal function for 'pairedTimes()'.
mSmetadataGroups	Easily extract groups of individuals from sample metadata.
mSpreviz	Process the 'iterativeClustering()' output to a new format ready for the implemented visualization functions.
pairedTimes	Generate one or multiple matrices with paired times.
pairedTimes-method	Generate one or multiple matrices with paired times.
plotmSdynamics	Generate boxplots of the stability dynamics throughout sampling times by groups.
plotmSheatmap	Plot a heatmap of the stability results.
plotmSlinesCV	Plot the stability values after 'iterativeClusteringCV()'.
plotmSscatter	Plot a scatter and side boxplot of the stability results.