LC-MS/MS Differential Expression Tests

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Documentation for package ‘msmsTests’ version 1.47.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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msmsTests-package	LC-MS/MS Differential Expression Tests
msms.edgeR	Spectral counts differential expression by edgeR
msms.glm.pois	Spectral counts differential expression by Poisson GLM
msms.glm.qlll	Spectral counts differential expression by quasi-likelihood GLM
msms.spk	Yeast lisate samples spiked with human proteins
msmsTests	LC-MS/MS Differential Expression Tests
pval.by.fc	Table of cumulative frequencies of p-values by log fold change bins
res.volcanoplot	Volcanoplot
test.results	Multitest p-value adjustment and post-test filter