Generation of null ranges via bootstrapping or covariate matching

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Documentation for package ‘nullranges’ version 1.15.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BootRanges	BootRanges object
bootRanges	Block bootstrap for genomic ranges
BootRanges-class	BootRanges object
combnCov	Function for creating combinations of covariates
combnCov-method	Function for creating combinations of covariates
covariates	Get covariates from a Matched object
covariates-method	Get covariates from a Matched object
focal	Get focal set from a Matched object
focal-method	Get focal set from a Matched object
indices	Get indices of matched set
indices-method	Get indices of matched set
makeExampleMatchedDataSet	Function for generating an example matchRanges or Matched dataset
makeExampleMatchedDataSet-method	Function for generating an example matchRanges or Matched dataset
Matched	Matched objects
matched	Get matched set from a Matched object
Matched-class	Matched objects
matched-method	Get matched set from a Matched object
matchedData	Get matched data from a Matched object
matchedData-method	Get matched data from a Matched object
MatchedDataFrame	MatchedDataFrame objects
MatchedDataFrame-class	MatchedDataFrame objects
MatchedGInteractions	MatchedGInteractions objects
MatchedGInteractions-class	MatchedGInteractions objects
MatchedGRanges	MatchedGRanges objects
MatchedGRanges-class	MatchedGRanges objects
matchitToMatched	Coerce 'matchit' to 'Matched' object
matchitToMatched-method	Coerce 'matchit' to 'Matched' object
matchRanges	Generate a covariate-matched control set of ranges
matchRanges-method	Generate a covariate-matched control set of ranges
method	Get matching method used for Matched object
method-method	Get matching method used for Matched object
oneRegionSegment	Segmentation based on one region
overview	Overview of matching quality
overview-method	Overview of matching quality
plotCovariate	Covariate plotting for Matched objects
plotCovariate-method	Covariate plotting for Matched objects
plotPropensity	Propensity score plotting for Matched objects
plotPropensity-method	Propensity score plotting for Matched objects
plotSegment	Plot genome segmentation
pool	Get pool set from a Matched object
pool-method	Get pool set from a Matched object
reduceSegment	Combine nearby regions with same state
segmentDensity	Genome segmentation based on feature density
unmatched	Get unmatched set from a Matched object
unmatched-method	Get unmatched set from a Matched object
withReplacement	Get replace method
withReplacement-method	Get replace method