Signature-based Clustering for Diagnostic Purposes

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Documentation for package ‘rScudo’ version 1.25.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

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rScudo-package	Signature-based Clustering for Diagnostic Purposes
consensusDownSignatures	Class ScudoResults
consensusDownSignatures-method	Class ScudoResults
consensusUpSignatures	Class ScudoResults
consensusUpSignatures-method	Class ScudoResults
distMatrix	Class ScudoResults
distMatrix-method	Class ScudoResults
downSignatures	Class ScudoResults
downSignatures-method	Class ScudoResults
groupsAnnotation	Class ScudoResults
groupsAnnotation-method	Class ScudoResults
scudoClassify	Performes classification using SCUDO
scudoCytoscape	Create a Cytoscape network from the output of scudoNetwork
scudoModel	Generate model for 'caret::train'
scudoNetwork	Create graph from a ScudoResults object
scudoNetwork-method	Create graph from a ScudoResults object
scudoParams	Class ScudoResults
scudoParams-method	Class ScudoResults
scudoPlot	Plot scudoNetwork result
ScudoResults	Class ScudoResults
ScudoResults-class	Class ScudoResults
scudoTest	Performs SCUDO analysis on test dataset
scudoTrain	Performs SCUDO analysis
selectedFeatures	Class ScudoResults
selectedFeatures-method	Class ScudoResults
show-method	Class ScudoResults
upSignatures	Class ScudoResults
upSignatures-method	Class ScudoResults