An R Interface for Ribo Files

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Documentation for package ‘ribor’ version 1.21.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

alias_hash	Ribo Class
alias_hash-method	Ribo Class
experiments	Ribo Class
experiments-method	Ribo Class
experiment_info	Ribo Class
experiment_info-method	Ribo Class
format_version	Ribo Class
format_version-method	Ribo Class
get_coverage	Retrieves the coverage data for a given transcript
get_experiments	Provides a list of experiments from a .ribo file
get_info	Get information about the .ribo file
get_internal_region_coordinates	Retrieves the region stop and start coordinates
get_internal_region_lengths	Returns the overall length of each region with UTR Junctions
get_length_distribution	Retrieves the length distribution of a given region
get_metadata	Retrieves the metadata of an experiment
get_metagene	Retrieves the metagene data from a .ribo file
get_original_region_coordinates	Retrieves the region stop and start coordinates
get_original_region_lengths	Returns the overall length of each region
get_reference_names	Retrieves a list of reference names
get_region_coordinates	Retrieves the region stop and start coordinates
get_region_counts	Retrieves the region counts from a .ribo file
get_region_lengths	Returns the overall length of each region with UTR Junctions
get_rnaseq	Information on the RNA-Seq data of the experiments, if any
get_tidy_metagene	Retrieves the metagene data in a tidy format
has_metadata	Ribo Class
has_metadata-method	Ribo Class
left_span	Ribo Class
left_span-method	Ribo Class
length_max	Ribo Class
length_max-method	Ribo Class
length_min	Ribo Class
length_min-method	Ribo Class
length_offset	Ribo Class
length_offset-method	Ribo Class
metagene_radius	Ribo Class
metagene_radius-method	Ribo Class
original_hash	Ribo Class
original_hash-method	Ribo Class
path	Ribo Class
path-method	Ribo Class
plot_length_distribution	Plots the length distribution
plot_metagene	Plots the metagene coverage data
plot_region_counts	Plots the region counts of UTR5, CDS, and UTR3
reference	Ribo Class
reference-method	Ribo Class
rename_default	Rename function for appris transcriptome naming convention
rename_transcripts	Renames the transcripts
Ribo	Ribo Class
Ribo-class	Ribo Class
ribor	ribor: A package for reading .ribo files
right_span	Ribo Class
right_span-method	Ribo Class
set_aliases	Set the aliases of a ribo object
show-method	Ribo Class
transcript_info	Ribo Class
transcript_info-method	Ribo Class