A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny

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Documentation for package ‘shiny.gosling’ version 1.5.0

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add_file_to_resource_path Track data object builder for local csv files
add_mark Visual marks
add_multi_tracks Combine single tracks.
add_single_track Add a single track
arrange_views Arrange views
atomic_values_to_list atomic_values_to_list
brush_styles style of the brush mark
build_json Build gosling spec from R list
component Create react component
compose_view Compose views
default_track_styles Default styles for tracks
event_styles Mouse event styles
export_pdf Export PDF
export_png Export PNG
get_file_track_data Track data object builder for local csv files
gosling Build gosling plot object
GoslingComponent Create Gosling component
goslingDependency Setup gosling dependencies
goslingOutput gosling output function
is_atomic_field is_atomic_field
json_list Create list
list_rm_null Remove null from list
print.gosling Print method for the gosling component
renderGosling gosling render function
run_example Runs a shiny.gosling example
track_data Data object builder
track_data_csv Data object builder for a csv file
track_data_gr Data object builder for a GRanges object by locally saving it
track_data_transform Data transformer
track_data_transforms Combine multiple data transforms
use_gosling Initiate gosling
visual_channel Generic visual channel builder
visual_channel_color color visual channel
visual_channel_opacity opacity visual channel
visual_channel_row row visual channel
visual_channel_size size visual channel
visual_channel_stroke stroke visual channel
visual_channel_stroke_width stroke width visual channel
visual_channel_text text visual channel
visual_channel_tooltip tooltip visual channel
visual_channel_tooltips Combine tooltips into a list
visual_channel_x x and xe axis visual channel
visual_channel_y y and ye axis visual channel
zoom_to Zoom to
zoom_to_extent Zoom to extent