R Package for Analyzing Tomo-seq Data

---

Documentation for package ‘tomoseqr’ version 1.13.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

animate2d	Animate 2D expressions along one axis and generate GIF file.
doadJunker2014	Load data of Junker2014 from cache.
downloadJunker2014	Download part of the Tomo-seq data published by Junker et al.
estimate3dExpressions	Estimate 3d expressions
extractGeneList	Extract geneIDs to which hoge can be applied.
findAxialGenes	Find peak genes on axial
getReconstructedResult	Get reconstructed matrix
imageViewer	Output the reconstructed expression pattern as an image.
mask	A matrix containing mask data.
masker	Make mask
plot1dAllExpression	Plot expressions of all genes along an axis
plot1dExpression	Plot expression of single gene along an axis
plotLossFunction	Plot the trend of the value of the loss function.
testx	A data.frame object containing a simulated Tomo-seq data for x-axis sections.
testy	A data.frame object containing a simulated Tomo-seq data for y-axis sections.
testz	A data.frame object containing a simulated Tomo-seq data for z-axis sections.
toDataFrame	Convert reconstructed matrix to data.frame.
tomoObj	A tomoSeq object.