Package: OVESEG
Type: Package
Title: OVESEG-test to detect tissue/cell-specific markers
Version: 1.26.0
Author: Lulu Chen <luluchen@vt.edu>
Maintainer: Lulu Chen <luluchen@vt.edu>
biocViews: Software, MultipleComparison, CellBiology, GeneExpression
Description: An R package for multiple-group comparison to detect
        tissue/cell-specific marker genes among subtypes. It provides
        functions to compute OVESEG-test statistics, derive component
        weights in the mixture null distribution model and estimate
        p-values from weightedly aggregated permutations. Obtained
        posterior probabilities of component null hypotheses can also
        portrait all kinds of upregulation patterns among subtypes.
License: GPL-2
Encoding: UTF-8
Depends: R (>= 3.6)
Suggests: knitr, rmarkdown, BiocStyle, testthat, ggplot2, gridExtra,
        grid, reshape2, scales
VignetteBuilder: knitr
Imports: stats, utils, methods, BiocParallel, SummarizedExperiment,
        limma, fdrtool, Rcpp
BugReports: https://github.com/Lululuella/OVESEG
RoxygenNote: 6.1.1
LinkingTo: Rcpp
SystemRequirements: C++11
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:49:34 UTC
RemoteUrl: https://github.com/bioc/OVESEG
RemoteRef: RELEASE_3_22
RemoteSha: 67b37c37c5cd46de33ea8bc822a8d16f909bca82
NeedsCompilation: yes
Packaged: 2025-11-11 16:24:48 UTC; root
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-11 16:28:53 UTC; windows
Archs: x64
