| addExonsGenes | addExonsGenes |
| anovaOnCNV | anovaOnCNV |
| cnvConfidence | cnvConfidence |
| pasteExonsGenes | pasteExonsGenes |
| phDunnetonCNV | phDunnetonCNV |
| plotCNV | plotCNV |
| plotCovPrep | plotCovPrep |
| prepAnova | prepAnova |
| regionGrangeMake | regionGrangeMake |
| regionMean | regionMean |
| regionQuantiles | regionQuantiles |
| regionSet | regionSet |
| regionSplit | regionSplit |
| seeDist | seeDist |
| setQDplot | setQDPlot |
| setupCNVplot | setupCNVplot |
| test_cnv | test cnv |
| test_cnv2 | test cnv 2 |
| test_cov | test coverage file |