| .extractSCE | Extract metadata from 'SingleCellExperiment' object |
| .extractSeurat | Extract metadata from 'Seurat' object |
| convertDataToList | Convert counts or proportions matrix to list object for propeller |
| estimateBetaParam | Estimate the parameters of a Beta distribution |
| estimateBetaParamsFromCounts | Estimate parameters of a Beta distribution from counts |
| getTransformedProps | Calculates and transforms cell type proportions |
| ggplotColors | Output a vector of colours based on the ggplot colour scheme |
| normCounts | Normalise a counts matrix to the median library size |
| pbmc_props | Cell type proportions from single cell PBMC data |
| plotCellTypeMeanVar | Plot cell type counts means versus variances |
| plotCellTypeProps | Plot cell type proportions for each sample |
| plotCellTypePropsMeanVar | Plot cell type proportions versus variances |
| propeller | Finding statistically significant differences in cell type proportions |
| propeller.anova | Performs F-tests for transformed cell type proportions |
| propeller.ttest | Performs t-tests of transformed cell type proportions |
| speckle_example_data | Generate example data |