Layered enrichment analysis of pathways R
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Documentation for package ‘leapR’ version 0.99.5
Help Pages
| calcTTest | calcTTest |
| cluster_enrichment | cluster_enrichment |
| combine_omics | combine_omics Combine two or more omics matrices into one multi-omics matrix with 'tagged' ids. |
| correlation_comparison_enrichment | correlation_comparison_enrichment |
| correlation_enrichment | correlation_enrichment |
| enrichment_in_abundance | enrichment_in_abundance |
| enrichment_in_groups | enrichment_in_groups |
| enrichment_in_relationships | enrichment_in_relationships |
| get_pathway_information | get_pathway_information |
| kinasesubstrates | Kinase substrate lists |
| krbpaths | KEGG, Reactome, BioCarta Pathways |
| leapR | leapR |
| longlist | Long list of patient samples |
| ncipid | NCI Gene lists |
| read_gene_sets | read_gene_sets |
| shortlist | A list of pathways and genes that comprise these pathways from msigdb |