asuri                   asuri: *A*nalysis of disease *SU*rvival and
                        patient *RI*sk prediction based on gene
                        signatures
ex_genePheno            ex_genePheno
ex_patientRisk          ex_patientRisk
ex_predictPatientRisk   ex_predictPatientRisk
ex_prefilterSAM         ex_prefilterSAM
genePheno               Identify Predictive Genes for a Phenotype
geneSurv                Kaplan-Meier Survival Analysis Based on Gene
                        Expression or Risk Score
patientRisk             patientRisk
plotBetas               Plot the ordered beta values for patientRisk()
plotBoxplot             Plot a Boxplot for geneSurv()
plotKM                  Plot the KM curves for geneSurv() and
                        patientRisk()
plotLambda              Plot a lambda distribution for patientRisk()
plotLogRank             Plot the logrank p-value for each patient
                        splitting for patientRisk()
plotProbClass           Plot a class probability distribution for
                        geneSurv()
plotSigmoid             Plot the ordered risk distribution for
                        patientRisk()
predict_PatientRisk     Predict Patient Risk Based on Gene Expression
                        Data
predict_SurvCurve       Predict Survival Curve for a Test Patient Using
                        Cox Model Predictions
prefilterSAM            Pre-filter Genes using SAM (Significance
                        Analysis of Microarrays)
seBRCA                  Example SummarizedExperiment object
