chunked_crossprod       Chunked computation of cross product
colranks                Compute columnwise ranks of matrix
cor_sparse_matrix       Calculate sparse correlation matrix handling
                        missing values
dualGSEA                Reimplementation of dualGSEA (Bull et al.,
                        2024) but defaults with replaid backend. For
                        the preranked test we still use fgsea. Should
                        be much faster than original using fgsea +
                        GSVA::ssGSEA.
fc_ttest                T-test statistical testing of differentially
                        enrichment
fc_ztest                Z-test statistical testing of differentially
                        enrichment
gmt2mat                 Convert GMT to Binary Matrix
gset.rankcor            Calculate gene set rank correlation
gset_averageCLR         Compute geneset expression as the average
                        log-ration of genes in the geneset. Requires
                        log-expression matrix X and (sparse) geneset
                        matrix matG.
gset_ttest              Perform t-test on gene set scores
mat.rowsds              Calculate row standard deviations for matrix
mat2gmt                 Convert Binary Matrix to GMT
matrix_metap            Matrix version for combining p-values using
                        fisher or stouffer method. Much faster than
                        doing metap::sumlog() and metap::sumz()
matrix_onesample_ttest
                        Perform one-sample t-test on matrix with gene
                        sets
normalize_medians       Normalize column medians of matrix
plaid                   Compute PLAID single-sample enrichment score
read.gmt                Read GMT File
replaid.aucell          Fast calculation of AUCell
replaid.gsva            Fast approximation of GSVA
replaid.scse            Fast calculation of scSE score
replaid.sing            Fast calculation of singscore
replaid.ssgsea          Fast calculation of ssGSEA
replaid.ucell           Fast calculation of UCell
sparse_colranks         Compute columm ranks for sparse matrix.
                        Internally used by colranks()
write.gmt               Write GMT File
