Changes in version 1.10.1                        

Add the published hoodscanR paper as the preferred package citation.

                        Changes in version 1.1.2                        

Fix bugs in test with R4.4

                        Changes in version 1.1.1                        

Small bug fix:

  - when data have cell_id within the colData.

                        Changes in version 1.1.0                        

Published in Bioconductor.

                       Changes in version 0.99.5                        

Remove codes that are commented out.

                       Changes in version 0.99.4                        

user perspective/experience

  - documentation update about output values
  - output variable/names parameter added to many functions
  - validity checks for spatialCoords are added to related functions
  - for loops are gone.

                       Changes in version 0.99.3                        

code

  - sapply change to vapply.
  - validity checks on inputs are now added to all functions using
    either is(spe, "SpatialExperiment") or is(m, "matrix") etc.

vignette

  - Explanation of plots and algorithm inside different functions are
    now added to the vignette briefly.
  - BiocStyle are now used.
  - BiocStyle to hyperlink packages are now used.
  - Fixed typo

documentation

  - data description of the test data has been added.
  - cross-link key function have added to the package help page.
  - the equation and theory of the calcMetrics are now added in the help
    page.

other

  - Bioconductor installation instructions is now added to the readme
    file.
  - code coverage is now almost 85%.
  - The LICENSE placeholders is now edited.

                       Changes in version 0.99.0                        

First submission to Bioconductor.