Package: MatrixRider
Type: Package
Title: Obtain total affinity and occupancies for binding site matrices
        on a given sequence
Version: 1.43.0
Date: 2015-11-02
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e@gmail.com>
Description: Calculates a single number for a whole sequence that
        reflects the propensity of a DNA binding protein to interact
        with it. The DNA binding protein has to be described with a PFM
        matrix, for example gotten from Jaspar.
biocViews: GeneRegulation, Genetics, MotifAnnotation
License: GPL-3
Depends: R (>= 3.1.2)
Imports: methods, TFBSTools, IRanges, XVector, Biostrings
Suggests: RUnit, BiocGenerics, BiocStyle, JASPAR2014
LinkingTo: IRanges, XVector, Biostrings, S4Vectors
NeedsCompilation: yes
git_url: https://git.bioconductor.org/packages/MatrixRider
git_branch: devel
git_last_commit: c9dff82
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
Date/Publication: 2025-11-04
Packaged: 2025-11-04 23:22:47 UTC; biocbuild
