# Generated by roxygen2: do not edit by hand

export(addEdgeAtts)
export(annotateGOont)
export(annotateGeneNames)
export(annotateGoBP)
export(annotateGoCC)
export(annotateGoMF)
export(annotateInterpro)
export(annotatePresynaptic)
export(annotateSCHanno)
export(annotateTopOntoOVG)
export(annotateVertex)
export(applpMatrixToGraph)
export(buildConsensusMatrix)
export(buildNetwork)
export(calcAllClustering)
export(calcBridgeness)
export(calcCentrality)
export(calcCentralityExternalDistances)
export(calcCentralityInternalDistances)
export(calcClustering)
export(calcDiseasePairs)
export(calcEntropy)
export(calcMembership)
export(calcReclusterMatrix)
export(calcSparsness)
export(clusterORA)
export(clusteringSummary)
export(degreeBinnedGDAs)
export(escapeAnnotation)
export(evalCentralitySignificance)
export(findLCC)
export(fitDegree)
export(fitSigmoid)
export(getAnnotationList)
export(getAnnotationVertexList)
export(getBridgeness)
export(getCentralityMatrix)
export(getClusterSubgraphByID)
export(getClustering)
export(getCommunityGraph)
export(getDType)
export(getDYNAMO)
export(getDiseases)
export(getEntropy)
export(getEntropyRate)
export(getGNP)
export(getGraphCentralityECDF)
export(getPA)
export(getRandomGraphCentrality)
export(getRobustness)
export(gofs)
export(layoutByCluster)
export(layoutByRecluster)
export(makeConsensusMatrix)
export(makeMembership)
export(markBowTie)
export(metlMatrix)
export(normModularity)
export(permute)
export(plotBridgeness)
export(plotEntropy)
export(plotRatio)
export(plotSigmoid)
export(prepareGDA)
export(recluster)
export(removeVertexTerm)
export(runPermDisease)
export(sampleDegBinnedGDA)
export(sampleGraphClust)
export(summaryStats)
export(unescapeAnnotation)
export(zeroNA)
exportClasses(law)
import(GO.db)
import(Matrix)
import(RSpectra)
import(WGCNA)
import(data.table)
import(ggplot2)
import(grid)
import(igraph)
import(latex2exp)
import(methods)
import(org.Hs.eg.db)
import(poweRlaw)
import(scales)
importFrom(AnnotationDbi,mapIds)
importFrom(AnnotationDbi,select)
importFrom(cowplot,plot_grid)
importFrom(dplyr,filter)
importFrom(fgsea,fora)
importFrom(ggrepel,geom_label_repel)
importFrom(igraph,arpack_defaults)
importFrom(igraph,as_adjacency_matrix)
importFrom(igraph,as_edgelist)
importFrom(igraph,contract)
importFrom(igraph,edge_attr)
importFrom(igraph,edge_attr_names)
importFrom(igraph,simplify)
importFrom(igraph,vertex_attr)
importFrom(minpack.lm,nls.lm.control)
importFrom(minpack.lm,nlsLM)
importFrom(rSpectral,spectral_igraph_communities)
importFrom(stats,confint)
importFrom(stats,fisher.test)
importFrom(stats,fitted)
importFrom(stats,ks.test)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stringr,str_sub)
importFrom(viridis,scale_color_viridis)
