# Generated by roxygen2: do not edit by hand

export(CLAMPbase)
export(CLAMPdotplot)
export(CLAMPdotplotAll)
export(CLAMPfull)
export(CLAMPfullnVP)
export(CLAMPplotTopZ)
export(CLAMPplotU)
export(allAgainstAllAUCs)
export(cleanFBM)
export(compareBs)
export(compute_svd)
export(cpmCLAMP)
export(cpmCLAMPFBM)
export(cross_ZY)
export(differentialLVActivity)
export(filterFBM)
export(findSplineMax)
export(getChat)
export(getGMT)
export(getMatchedPathwayMat)
export(getMatchedPathwayMatList)
export(getScaleFromSVs)
export(gmtListToSparseMat)
export(mat_mult)
export(num.pc)
export(oneToOneMask)
export(plotTopZ_Complex)
export(preprocessCLAMP)
export(preprocessCLAMPFBM)
export(projectCLAMP)
export(read_gmt)
export(ridge_B)
export(select_clamp_k)
export(select_svd_k)
export(solveU)
export(squashZscore)
export(tscale)
export(winsor_topk)
export(zscoreCLAMP)
export(zscoreCLAMPFBM)
import(ComplexHeatmap)
import(circlize)
importFrom(Matrix,Matrix)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,crossprod)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(Matrix,tcrossprod)
importFrom(Rcpp,sourceCpp)
importFrom(bigstatsr,FBM)
importFrom(bigstatsr,big_apply)
importFrom(bigstatsr,big_copy)
importFrom(bigstatsr,big_cprodMat)
importFrom(bigstatsr,big_prodMat)
importFrom(bigstatsr,cols_along)
importFrom(bigstatsr,rows_along)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,slice_max)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_colour_gradient)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,unit)
importFrom(ggrepel,geom_text_repel)
importFrom(glmnet,cv.glmnet)
importFrom(glmnet,glmnet)
importFrom(irlba,irlba)
importFrom(matrixStats,colRanks)
importFrom(methods,show)
importFrom(rlang,.data)
importFrom(rsvd,rsvd)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,smooth)
importFrom(stats,smooth.spline)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(stats,wilcox.test)
importFrom(utils,data)
importFrom(utils,download.file)
importFrom(utils,flush.console)
importFrom(utils,globalVariables)
importFrom(utils,read.table)
useDynLib(CLAMP, .registration=TRUE)
