.populateEntityInformationInDataFrame
                        Populate Entity Information in Data Frame
.populateEntityInformationWithGilda
                        Populate entity grounding columns via Gilda
.populateEntityInformationWithIndraCogex
                        Populate entity grounding columns via INDRA
                        cogex APIs
.populateKinaseInfoInDataFrame
                        Populate Kinase Info in Data Frame
.populatePhophataseInfoInDataFrame
                        Populate Phosphatase Info in Data Frame
.populateTranscriptionFactorInfoInDataFrame
                        Populate Transcription Factor Info in Data
                        Frame
.populateUniprotIdsInDataFrame
                        Populate Uniprot IDs in Data Frame
.validateAnnotateProteinInfoFromIndraInput
                        Validate Annotate Protein Info Input
annotateProteinInfoFromIndra
                        Annotate Protein Information from Indra
bootstrapTopicModels    Bootstrap the topic decomposition to find each
                        topic's robust top words
compareTopicModels      Test whether including PPIs changes topic
                        structure beyond random chance
cytoscapeNetwork        Render a Cytoscape network visualisation
cytoscapeNetworkOutput
                        Shiny output binding for cytoscapeNetwork
decomposeSubnetworkByTopic
                        Decompose a subnetwork into topic-specific
                        subnetworks via joint NMF
deleteEdgeFromNetwork   Delete an edge from a network edges data frame
exportNetworkToHTML     Export network data with Cytoscape
                        visualization
filterSubnetworkByContext
                        Filter a subnetwork by contextual relevance
getSubnetworkFromIndra
                        Get subnetwork from INDRA database
previewNetworkInBrowser
                        Preview network in browser
renderCytoscapeNetwork
                        Render a Cytoscape network in a Shiny
                        application. This function is used to render a
                        Cytoscape network visualization within a Shiny
                        application.
