# Generated by roxygen2: do not edit by hand

export(addCustomReaction)
export(annotateKoClass)
export(annotateOrigin)
export(buildCompoundEgoNetwork)
export(buildCrossSpeciesNetwork)
export(buildEgoNetwork)
export(buildKeggNetwork)
export(clusterNetwork)
export(combineNetworks)
export(convertGene)
export(enrichPathway)
export(enrichmentDotPlot)
export(findKeggIDs)
export(findMappedNodes)
export(findShortestPaths)
export(getPathIDs)
export(mapReaction)
export(networkDistances)
export(networkSimilarity)
export(permutePaths)
export(removeDrugs)
export(removeNetworkNodes)
export(replaceNode)
export(suggestEntities)
export(viewClusterCy)
export(viewNetworkCy)
export(viewNetworkR)
importFrom(KEGGREST,keggCompounds)
importFrom(KEGGREST,keggConv)
importFrom(KEGGREST,keggGet)
importFrom(KEGGREST,keggLink)
importFrom(KEGGREST,keggList)
importFrom(RCurl,getURL)
importFrom(RCy3,createNetworkFromDataFrames)
importFrom(RCy3,cytoscapePing)
importFrom(RCy3,getTableColumns)
importFrom(RCy3,setEdgeLineStyleMapping)
importFrom(RCy3,setEdgeTargetArrowShapeMapping)
importFrom(RCy3,setNodeColorMapping)
importFrom(RCy3,setNodeLabelMapping)
importFrom(RCy3,setNodePropertyBypass)
importFrom(RCy3,setNodeShapeMapping)
importFrom(RCy3,setVisualPropertyDefault)
importFrom(curl,curl_fetch_memory)
importFrom(curl,new_handle)
importFrom(dplyr,case_when)
importFrom(ggplot2,aes)
importFrom(ggplot2,after_stat)
importFrom(ggplot2,annotate)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,theme_void)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,ggraph)
importFrom(grid,unit)
importFrom(igraph,V)
importFrom(igraph,as.undirected)
importFrom(igraph,cluster_leiden)
importFrom(igraph,cluster_louvain)
importFrom(igraph,components)
importFrom(igraph,distances)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,induced_subgraph)
importFrom(igraph,membership)
importFrom(jsonlite,fromJSON)
importFrom(mygene,query)
importFrom(rlang,.data)
importFrom(stats,aggregate)
importFrom(stats,density)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(tidygraph,as_tbl_graph)
importFrom(tidygraph,tbl_graph)
importFrom(utils,capture.output)
importFrom(utils,head)
importFrom(utils,read.delim)
importFrom(utils,tail)
importFrom(webchem,get_cid)
