TiDEomics-package	TiDEomics-package
.anno_multicol_textbox	dot-anno_multicol_textbox
.build_marked_features_anno	dot-build_marked_features_anno
.check_character	dot-check_character
.check_df	dot-check_df
.check_df_feature_property	dot-check_df_feature_property
.check_df_trendy_summary	dot-check_df_trendy_summary
.check_limma_input	dot-check_limma_input
.check_list	dot-check_list
.check_logical	dot-check_logical
.check_nonneg	dot-check_nonneg
.check_numeric	dot-check_numeric
.check_positive	dot-check_positive
.check_positive_int	dot-check_positive_int
.check_pval	dot-check_pval
.check_se	dot-check_se
.check_se_has_properties	dot-check_se_has_properties
.check_se_list	dot-check_se_list
.check_se_list_has_properties	dot-check_se_list_has_properties
.check_se_list_merged	dot-check_se_list_merged
.check_se_list_no_na	dot-check_se_list_no_na
.check_se_merged	dot-check_se_merged
.hypergeometric_test	dot-hypergeometric_test
.match_assay	dot-match_assay
.measure_multicol_widths	dot-measure_multicol_widths
.module_labels	dot-module_labels
.multicol_textbox_col_grob	dot-multicol_textbox_col_grob
.multicol_textbox_grob	dot-multicol_textbox_grob
.plot_modules_input	dot-plot_modules_input
.plot_segments_one_group	dot-plot_segments_one_group
.prepare_gene_list	dot-prepare_gene_list
.reformat_cat_terms	dot-reformat_cat_terms
.run_Trendy_one_group	dot-run_Trendy_one_group
.summarise_Trendy_one_group	dot-summarise_Trendy_one_group
.textbox_grob	dot-textbox_grob
.umap_n_neighbors	dot-umap_n_neighbors
.WGCNA_input	dot-WGCNA_input
calc_feature_property	calc_feature_property
calc_mean_sd	calc_mean_sd
create_input	create_input
decomp_variance	decomp_variance
DE_between_group	DE_between_group
DE_between_time	DE_between_time
enrichGO_list	enrichGO_list
enrichGO_rank	enrichGO_rank
enrichR_list	enrichR_list
enrich_msigdb	enrich_msigdb
example_go	example_go
example_net	example_net
example_obj	example_obj
example_res_list	example_res_list
extract_hubs	extract_hubs
extract_segment_trends	extract_segment_trends
flatten_DE	flatten_DE
flatten_enrich	flatten_enrich
get_custom_palette	get_custom_palette
group_specific_features	group_specific_features
impute_groups	impute_groups
merge_groups	merge_groups
merge_replicates	merge_replicates
normalise_to_start	normalise_to_start
plot_breakpoints	plot_breakpoints
plot_cor_matrix	plot_cor_matrix
plot_cv	plot_cv
plot_DE_between_group	plot_DE_between_group
plot_DE_between_time	plot_DE_between_time
plot_distribution	plot_distribution
plot_GO	plot_GO
plot_ID	plot_ID
plot_missing	plot_missing
plot_modules_h	plot_modules_h
plot_modules_v	plot_modules_v
plot_pca	plot_pca
plot_pca_3D	plot_pca_3D
plot_pca_arrows	plot_pca_arrows
plot_pca_by_group	plot_pca_by_group
plot_segments	plot_segments
plot_trend	plot_trend
plot_umap	plot_umap
plot_umap_by_group	plot_umap_by_group
plot_variance	plot_variance
plot_volcano	plot_volcano
plot_WGCNA	plot_WGCNA
prepare_tide	prepare_tide
prepare_WGCNA	prepare_WGCNA
run_Trendy	run_Trendy
run_WGCNA	run_WGCNA
set_custom_palette	set_custom_palette
split_groups	split_groups
summarise_feature_property	summarise_feature_property
summarise_module_metrics	summarise_module_metrics
summarise_module_pattern	summarise_module_pattern
summarise_Trendy	summarise_Trendy
theme_custom	theme_custom
TiDEomics	TiDEomics-package
tutorial_data	tutorial_data
tutorial_sample_info	tutorial_sample_info
WGCNA_module	WGCNA_module
