annotaTEs               Get RepeatMasker UCSC annotations
annotateTEsGetters      Getter functions of TE classes from parsed
                        RepeatMasker annotations.
atena-package           atena: analysis of transposable elements in R
                        and Bioconductor
atenaParam-class        atena parameter class
ERVmapParam-class       ERVmap parameter class
OneCodeToFindThemAll    OneCodeToFindThemAll parser of RepeatMasker
                        annotations
ovUnion                 Pre-defined overlapping mode functions
qtex,ERVmapParam-method
                        Quantify transposable element expression
QuantifyParam-class     QuantifyParam parameter class
rmskatenaparser         atena annotation parser of RepeatMasker
                        annotations
rmskbasicparser         Parser of RepeatMasker annotations
rmskidentity            Identity function for parsefun
TelescopeParam-class    Telescope parameter class
TEtranscriptsParam-class
                        TEtranscripts parameter class
