Package: augere.gsea
Version: 0.99.1
Date: 2026-04-11
Title: Automatic Generation of Gene Set Enrichment Analyses
Description: Implements pipelines for generating gene set enrichment
        analysis reports in the augere framework. This includes various
        competitive and self-contained gene sets from a variety of
        Bioconductor packages. Each pipeline function generates a
        self-contained Rmarkdown report with all of the steps required
        to reproduce the gene set enrichment analysis.
Authors@R: person("Aaron", "Lun", role=c("cre", "aut"), email="infinite.monkeys.with.keyboards@gmail.com", comment=c(ORCID="0000-0002-3564-4813"))
License: MIT + file LICENSE
Imports: stats, limma, S4Vectors, IRanges, augere.core, augere.de
Suggests: testthat, knitr, rmarkdown, BiocStyle, airway, goseq, fgsea,
        SummarizedExperiment, org.Hs.eg.db, GO.db
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://github.com/augere-bioinfo/augere.gsea
BugReports: https://github.com/augere-bioinfo/augere.gsea/issues
biocViews: WorkflowManagement, ReportWriting, GeneSetEnrichment
Config/pak/sysreqs: libssl-dev libnode-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-14 22:20:48 UTC
RemoteUrl: https://github.com/bioc/augere.gsea
RemoteRef: HEAD
RemoteSha: a7cb67d5db8416d6ffe5e1387eb2a13d57c10d7c
NeedsCompilation: no
Packaged: 2026-05-15 06:37:13 UTC; root
Author: Aaron Lun [cre, aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Built: R 4.6.0; ; 2026-05-15 06:54:22 UTC; unix
