R: Bioconductor facilities for parallel evaluation

# Bioconductor facilities for parallel evaluation

## Documentation for package ‘BiocParallel’ version 1.47.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

B C D I L M P R S misc

BiocParallel-package | Bioconductor facilities for parallel evaluation

## -- B --

BatchJobsParam | Defunct Objects in Package 'BiocParallel'
batchtoolsCluster | Enable parallelization on batch systems
BatchtoolsParam | Enable parallelization on batch systems
BatchtoolsParam-class | Enable parallelization on batch systems
batchtoolsRegistryargs | Enable parallelization on batch systems
batchtoolsTemplate | Enable parallelization on batch systems
batchtoolsWorkers | Enable parallelization on batch systems
BiocParallel | Bioconductor facilities for parallel evaluation
BiocParallel-deprecated | Deprecated Functions in Package 'BiocParallel'
BiocParallelParam | BiocParallelParam objects
BiocParallelParam-class | BiocParallelParam objects
BIOCPARALLEL_WORKER_MAX | Environment control of worker number
BIOCPARALLEL_WORKER_NUMBER | Environment control of worker number
bpaggregate | Apply a function on subsets of data frames
bpaggregate-method | Apply a function on subsets of data frames
bpbackend | BiocParallelParam objects
bpbackend-method | Enable parallelization on batch systems
bpbackend-method | BiocParallelParam objects
bpbackend-method | Enable parallel evaluation using registered dopar backend
bpbackend-method | Enable multi-core parallel evaluation
bpbackend-method | Enable serial evaluation
bpbackend-method | Enable simple network of workstations (SNOW)-style parallel evaluation
bpbackend<- | BiocParallelParam objects
bpbackend<--method | BiocParallelParam objects
bpbackend<--method | Enable parallel evaluation using registered dopar backend
bpbackend<--method | Enable simple network of workstations (SNOW)-style parallel evaluation
bperrorTypes | Resume computation with partial results
bpexportglobals | BiocParallelParam objects
bpexportglobals-method | BiocParallelParam objects
bpexportglobals<- | BiocParallelParam objects
bpexportglobals<--method | BiocParallelParam objects
bpexportvariables | BiocParallelParam objects
bpexportvariables-method | BiocParallelParam objects
bpexportvariables<- | BiocParallelParam objects
bpexportvariables<--method | BiocParallelParam objects
bpfallback | BiocParallelParam objects
bpfallback-method | BiocParallelParam objects
bpfallback<- | BiocParallelParam objects
bpfallback<--method | BiocParallelParam objects
bpforceGC | BiocParallelParam objects
bpforceGC-method | BiocParallelParam objects
bpforceGC<- | BiocParallelParam objects
bpforceGC<--method | BiocParallelParam objects
bpisup | BiocParallelParam objects
bpisup-method | Enable parallelization on batch systems
bpisup-method | BiocParallelParam objects
bpisup-method | Enable parallel evaluation using registered dopar backend
bpisup-method | Enable multi-core parallel evaluation
bpisup-method | Enable serial evaluation
bpisup-method | Enable simple network of workstations (SNOW)-style parallel evaluation
bpiterate | Parallel iteration over an indeterminate number of data chunks
bpiterate-method | Parallel iteration over an indeterminate number of data chunks
bpiterateAlong | Parallel iteration over an indeterminate number of data chunks
bpjobname | BiocParallelParam objects
bpjobname-method | BiocParallelParam objects
bpjobname<- | BiocParallelParam objects
bpjobname<--method | BiocParallelParam objects
bplapply | Parallel lapply-like functionality
bplapply-method | Enable parallelization on batch systems
bplapply-method | Parallel lapply-like functionality
bplog | BiocParallelParam objects
bplog-method | BiocParallelParam objects
bplog-method | Enable serial evaluation
bplog-method | Enable simple network of workstations (SNOW)-style parallel evaluation
bplog<- | BiocParallelParam objects
bplog<--method | Enable serial evaluation
bplog<--method | Enable simple network of workstations (SNOW)-style parallel evaluation
bplogdir | BiocParallelParam objects
bplogdir-method | Enable parallelization on batch systems
bplogdir-method | BiocParallelParam objects
bplogdir-method | Enable serial evaluation
bplogdir<- | BiocParallelParam objects
bplogdir<--method | Enable parallelization on batch systems
bplogdir<--method | BiocParallelParam objects
bplogdir<--method | Enable serial evaluation
bploop | Internal Functions for SNOW-style Parallel Evaluation
bploop.iterate | Internal Functions for SNOW-style Parallel Evaluation
bploop.lapply | Internal Functions for SNOW-style Parallel Evaluation
bpmapply | Parallel mapply-like functionality
bpmapply-method | Parallel mapply-like functionality
bpnworkers | BiocParallelParam objects
bpok | Resume computation with partial results
bpoptions | Additional options to parallel evaluation
bpparam | Maintain a global registry of available back-end Params
bpprogressbar | BiocParallelParam objects
bpprogressbar-method | BiocParallelParam objects
bpprogressbar<- | BiocParallelParam objects
bpprogressbar<--method | BiocParallelParam objects
bpresult | Resume computation with partial results
bpresultdir | BiocParallelParam objects
bpresultdir-method | BiocParallelParam objects
bpresultdir<- | BiocParallelParam objects
bpresultdir<--method | BiocParallelParam objects
bpRNGseed | BiocParallelParam objects
bpRNGseed-method | Enable parallelization on batch systems
bpRNGseed-method | BiocParallelParam objects
bpRNGseed<- | BiocParallelParam objects
bpRNGseed<--method | Enable parallelization on batch systems
bpRNGseed<--method | BiocParallelParam objects
bprunMPIslave | Defunct Objects in Package 'BiocParallel'
bprunMPIworker | Internal Functions for SNOW-style Parallel Evaluation
bpschedule | Schedule back-end Params
bpschedule-method | Enable parallelization on batch systems
bpschedule-method | Enable multi-core parallel evaluation
bpschedule-method | Schedule back-end Params
bpstart | BiocParallelParam objects
bpstart-method | Enable parallelization on batch systems
bpstart-method | BiocParallelParam objects
bpstart-method | Enable parallel evaluation using registered dopar backend
bpstart-method | Enable multi-core parallel evaluation
bpstart-method | Enable serial evaluation
bpstart-method | Enable simple network of workstations (SNOW)-style parallel evaluation
bpstop | BiocParallelParam objects
bpstop-method | Enable parallelization on batch systems
bpstop-method | BiocParallelParam objects
bpstop-method | Enable parallel evaluation using registered dopar backend
bpstop-method | Enable multi-core parallel evaluation
bpstop-method | Enable serial evaluation
bpstop-method | Enable simple network of workstations (SNOW)-style parallel evaluation
bpstopOnError | BiocParallelParam objects
bpstopOnError-method | BiocParallelParam objects
bpstopOnError<- | BiocParallelParam objects
bpstopOnError<--method | BiocParallelParam objects
bptasks | BiocParallelParam objects
bptasks-method | BiocParallelParam objects
bptasks<- | BiocParallelParam objects
bptasks<--method | BiocParallelParam objects
bpthreshold | BiocParallelParam objects
bpthreshold-method | BiocParallelParam objects
bpthreshold-method | Enable simple network of workstations (SNOW)-style parallel evaluation
bpthreshold<- | BiocParallelParam objects
bpthreshold<--method | Enable serial evaluation
bpthreshold<--method | Enable simple network of workstations (SNOW)-style parallel evaluation
bptimeout | BiocParallelParam objects
bptimeout-method | BiocParallelParam objects
bptimeout<- | BiocParallelParam objects
bptimeout<--method | BiocParallelParam objects
bptry | Try expression evaluation, recovering from bperror signals
bpvalidate | Tools for developing functions for parallel execution in distributed memory
BPValidate-class | Tools for developing functions for parallel execution in distributed memory
bpvec | Parallel, vectorized evaluation
bpvec-method | Parallel, vectorized evaluation
bpvectorize | Transform vectorized functions into parallelized, vectorized function
bpvectorize-method | Transform vectorized functions into parallelized, vectorized function
bpworkers | BiocParallelParam objects
bpworkers-method | Enable parallelization on batch systems
bpworkers-method | BiocParallelParam objects
bpworkers-method | Enable parallel evaluation using registered dopar backend
bpworkers-method | Enable serial evaluation
bpworkers-method | Enable simple network of workstations (SNOW)-style parallel evaluation
bpworkers<- | BiocParallelParam objects
bpworkers<--method | Enable multi-core parallel evaluation
bpworkers<--method | Enable simple network of workstations (SNOW)-style parallel evaluation

## -- C --

coerce-method | Enable parallel evaluation using registered dopar backend
coerce-method | Enable simple network of workstations (SNOW)-style parallel evaluation

## -- D --

DoparParam | Enable parallel evaluation using registered dopar backend
DoparParam-class | Enable parallel evaluation using registered dopar backend

## -- I --

ipcid | Inter-process locks and counters
ipclock | Inter-process locks and counters
ipclocked | Inter-process locks and counters
ipcremove | Inter-process locks and counters
ipcreset | Inter-process locks and counters
ipctrylock | Inter-process locks and counters
ipcunlock | Inter-process locks and counters
ipcvalue | Inter-process locks and counters
ipcyield | Inter-process locks and counters

## -- L --

length-method | Enable multi-core parallel evaluation
length-method | Enable serial evaluation

## -- M --

MulticoreParam | Enable multi-core parallel evaluation
MulticoreParam-class | Enable multi-core parallel evaluation
multicoreWorkers | Enable multi-core parallel evaluation

## -- P --

print.remote_error | BiocParallelParam objects

## -- R --

register | Maintain a global registry of available back-end Params
registered | Maintain a global registry of available back-end Params
R_PARALLELLY_AVAILABLECORES_FALLBACK | Environment control of worker number

## -- S --

SerialParam | Enable serial evaluation
SerialParam-class | Enable serial evaluation
show-method | Enable parallelization on batch systems
show-method | BiocParallelParam objects
show-method | Enable parallel evaluation using registered dopar backend
show-method | Enable multi-core parallel evaluation
show-method | Enable simple network of workstations (SNOW)-style parallel evaluation
show-method | Tools for developing functions for parallel execution in distributed memory
SnowParam | Enable simple network of workstations (SNOW)-style parallel evaluation
SnowParam-class | Enable simple network of workstations (SNOW)-style parallel evaluation
snowWorkers | Enable simple network of workstations (SNOW)-style parallel evaluation

## -- misc --

.BiocParallelParam_prototype | Developer interface
.bpiterate_impl | Developer interface
.bplapply_impl | Developer interface
.bpstart_impl | Developer interface
.bpstop_impl | Developer interface
.bpworker_impl | Developer interface
.close | Developer interface
.close-method | Developer interface
.close-method | Enable multi-core parallel evaluation
.manager | Developer interface
.manager-method | Developer interface
.manager_capacity | Developer interface
.manager_capacity-method | Developer interface
.manager_cleanup | Developer interface
.manager_cleanup-method | Developer interface
.manager_flush | Developer interface
.manager_flush-method | Developer interface
.manager_recv | Developer interface
.manager_recv-method | Developer interface
.manager_recv_all | Developer interface
.manager_recv_all-method | Developer interface
.manager_send | Developer interface
.manager_send-method | Developer interface
.manager_send_all | Developer interface
.manager_send_all-method | Developer interface
.prototype_update | Developer interface
.recv | Developer interface
.recv-method | Developer interface
.recv-method | Enable multi-core parallel evaluation
.recv_all | Developer interface
.recv_all-method | Developer interface
.recv_all-method | Enable multi-core parallel evaluation
.recv_any | Developer interface
.recv_any-method | Developer interface
.recv_any-method | Enable multi-core parallel evaluation
.registerOption | Developer interface
.send | Developer interface
.send-method | Developer interface
.send-method | Enable multi-core parallel evaluation
.send_all | Developer interface
.send_all-method | Developer interface
.send_to | Developer interface
.send_to-method | Developer interface
.send_to-method | Enable multi-core parallel evaluation
.task_const | Developer interface
.task_dynamic | Developer interface
.task_remake | Developer interface