buildGOmap              buildGOmap
clusterSim              Semantic similarity between two gene clusters
combineScores           combining similarity matrix to similarity score
geneSim                 Semantic similarity between two genes
get_organism            Get organism name from OrgDb object
go_term_table           Information content of GO terms
godata                  godata
GOSemSimDATA-class      Class "GOSemSimDATA" This class stores IC and
                        gene to go mapping for semantic similarity
                        measurement
goSim                   Semantic similarity between two GO terms
infoContentMethod       information content based methods
mclusterSim             Pairwise semantic similarities for a list of
                        gene clusters
mgeneSim                Pairwise semantic similarity for a list of
                        genes
mgoSim                  Semantic similarity between two GO term sets
read.blast2go           read.blast2go
read.gaf                read.gaf
set_auto_update         Control auto-update of ontology databases
tcss_cutoff             determine the topological cutoff for TCSS
                        method
termSim                 termSim
wangMethod_internal     wangMethod
