Creating, Rendering, and Mapping Omics Data on KEGG Pathway
Graphs
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Documentation for package ‘KEGGemUP’ version 0.99.1
Help Pages
| cleanup_title_node | Cleanup the title node from a KEGG igraph object |
| create_kegg_graph | Create a graph for a KEGG pathway |
| display_cache_KEGGemUP | Return all cached KEGGemUP information |
| export_kegg_graph | Export a KEGG graph |
| get_kegg_db | Get a KEGG database file |
| highlight_kegg_graph | Highlight a subset of the KEGG graph |
| map_results_to_graph | Map continuous values to graph nodes |
| render_kegg_graph | Create an interactive visualization of KEGG pathways with visNetwork |
| reset_cache_KEGGemUP | Reset all KEGGemUP caches |
| res_de_macro_IFNg_vs_naive | A sample 'data.frame' containing Differential Expression Analysis, generated with 'limma' |
| retrieve_all_pathways | Download all pathways |
| retrieve_kgml | Download a KGML file |
| subset_kegg_graph | Subset a graph object for a KEGG pathway |