# Generated by roxygen2: do not edit by hand

export(OGREDataSet)
export(OGREDataSetFromDir)
export(SHREC)
export(addDataSetFromHub)
export(addGRanges)
export(covPlot)
export(extendGRanges)
export(extractPromoters)
export(fOverlaps)
export(gvizPlot)
export(listPredefinedDataSets)
export(loadAnnotations)
export(makeExampleGRanges)
export(makeExampleOGREDataSet)
export(plotHist)
export(readDataSetFromFolder)
export(subsetGRanges)
export(sumPlot)
export(summarizeOverlap)
import(GenomicRanges)
import(Gviz, except = tags)
import(S4Vectors)
import(data.table, except = c(shift,second,first))
import(ggplot2)
import(methods)
import(shiny)
import(shinydashboard)
importFrom(AnnotationHub,AnnotationHub)
importFrom(AnnotationHub,query)
importFrom(DT,JS)
importFrom(DT,datatable)
importFrom(DT,renderDT)
importFrom(GenomeInfoDb,dropSeqlevels)
importFrom(GenomeInfoDb,keepStandardChromosomes)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,IRanges)
importFrom(Seqinfo,"seqlengths<-")
importFrom(Seqinfo,"seqlevels<-")
importFrom(Seqinfo,Seqinfo)
importFrom(Seqinfo,seqlengths)
importFrom(Seqinfo,seqlevels)
importFrom(Seqinfo,sortSeqlevels)
importFrom(assertthat,assert_that)
importFrom(ggplot2,ggplot)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(rtracklayer,import.gff)
importFrom(shinyBS,bsTooltip)
importFrom(shinyFiles,parseDirPath)
importFrom(shinyFiles,shinyDirButton)
importFrom(shinyFiles,shinyDirChoose)
importFrom(stats,setNames)
importFrom(tidyr,"%>%")
