OGRE-package            OGRE package to calculate, analyze and
                        visiualize overlap between annotated genomic
                        region datasets
OGREDataSet             BuildOGREDataSet
OGREDataSetFromDir      BuildOGREDataSetFromDir
SHREC                   SHREC SHiny interface for REgion Comparison
addDataSetFromHub       Add dataSet from AnnotationHub
addGRanges              Add GenomicRanges
covPlot                 Coverage plot
extendGRanges           Extend a GRanges object
extractPromoters        Extract promoter
fOverlaps               Find overlaps
gvizPlot                Generate Gviz plot
listPredefinedDataSets
                        List predefined datasets
loadAnnotations         Load annotation datasets
makeExampleGRanges      Make an example GRanges dataset
makeExampleOGREDataSet
                        Make a example OGRE dataset
plotHist                Plot histogram
readDataSetFromFolder   Read dataset(s) from folder
subsetGRanges           Subset a GRanges object
sumPlot                 Generate summary plot
summarizeOverlap        Calculates min/max/average overlap
